TABLE 3.
Functional classes and possible ORFs identified in random biofilm genome sequences after automated BlastX searchesa
| Functional class | No. of complete or partial proteins identified | % of total |
|---|---|---|
| Regulatory function | 112 | 8.4 |
| Metabolism and catabolism | 455 | 34.0 |
| Cell processes and structure | 132 | 9.0 |
| Elements of external origin | 22 | 1.7 |
| DNA/RNA-modifying enzymes | 117 | 8.8 |
| Protection responses | 28 | 2.1 |
| Transport proteins | 112 | 8.4 |
| Hypothetical proteins | 318 | 23.9 |
| Miscellaneous | 48 | 3.7 |
| Total | 1,344 | 100.0 |
All BlastX results and corresponding sequences are publicly available together with other information at http//www.gwdg/∼biofilm/.