TABLE 4.
Genes identified and observed similarities for ORFs identified on pBioVa
| ORF | Size of putative protein (AA) | Function, closest match | GenBank accession no. of closest match | ORF alignment region (AA) | Alignment region (AA range/total AA) | % Identity |
|---|---|---|---|---|---|---|
| csv001 | 258 | d-Pantothenate synthesis, panC Ralstonia solanacearum | NP520508.1 | 1-256 | 1-247/283 | 58 |
| csv002 | 315 | d-Pantothenate synthesis, panB Neisseria meningitides | NP283858.1 | 48-308 | 2-255/263 | 56 |
| csv003 | 288 | Sterol desaturase Shewanella oneidensis | AAN56787.1 | 15-280 | 11-280/287 | 52 |
| csv004 | 265 | Hypothetical protein Burkholderia fungorum | ZP00029113.1 | 2-265 | 28-291/291 | 73 |
| csv005 | 324 | Hypothetical protein Pseudomonas fluorescens | ZP00083568.1 | 2-315 | 3-317/456 | 29 |
| csv006 | 627 | Sulfate transporter Chlorobium tepidum | AAM71951.1 | 78-625 | 40-586/618 | 41 |
| csv007 | 701 | Methionyl-tRNA synthetase Ralstonia solanacearum | CAD16088.1 | 3-701 | 4-688/688 | 58 |
| csv008 | 375 | MRP ATP binding protein Ralstonia solanacearum | CAD16086.1 | 1-369 | 1-359/362 | 57 |
| csv009 | 875 | Histidine kinase Nostoc sp. | BAB73836.1 | 205-822 | 309-912/944 | 22 |
| csv010 | 213 | Response regulator Mycobacterium tuberculosis | AAK45932.1 | 10-201 | 18-200/208 | 25 |
| csv011 | 357 | Hypothetical protein Geobacter metallireducens | ZP00081330.1 | 113-337 | 181-396/397 | 47 |
| csv012 | 1,248 | Hypothetical protein Magnetococcus sp. | ZP0004555.1 | 300-1186 | 159-1045/1202 | 34 |
| csv013 | 742 | Hypothetical protein Magnetococcus sp. | ZP0043181.1 | 3-727 | 28-733/733 | 32 |
| csv014 | 584 | Hypothetical protein Xanthomonas axonopodis | AAM35315.1 | 167-580 | 129-537/542 | 30 |
| csv015 | 505 | Hypothetical protein Rhodopseudomonas palustris | ZP00012497 | 6-499 | 3-491/499 | 52 |
| csv016 | 553 | Hypothetical protein Pseudomonas fluorescens | ZP0084879.1 | 161-551 | 19-407/410 | 60 |
| csv017 | 524 | ABC transporter Pseudomonas putida | AAN67853.1 | 1-520 | 96-617/617 | 68 |
| csv018 | 151 | Hypothetical protein Ralstonia metallidurans | ZP00022071.1 | 1-150 | 1-150/150 | 66 |
| csv019 | 165 | Hypothetical protein Pseudomonas syringae | ZP00125646.1 | 15-164 | 15-165/169 | 37 |
| csv020 | 615 | p-Aminobenzoate-synthase component Listeria innocua | CAC98119.1 | 28-603 | 15-566/568 | 39 |
| aroC | 380 | Chorismate synthase Ralstonia solanacearum | CAD15268.1 | 14-379 | 1-366/366 | 78 |
| csv022 | 427 | Ribonuclease Ralstonia solanacearum | NP519680.1 | 36-402 | 8-375/441 | 39 |
a
AA, amino acids. DNA sequences were submitted to GenBank under accession number AY280634. Identified ORFs were designated a gene name if the observed e value was below 10−80.