TABLE 6.
Genes and observed similarities for ORFs identified on the 75-kb DNA fragment formed by overlapping cosmids pbioX and pbioYa
| ORF | Size of putative protein (AA) | Function, closest match | GenBank accession no. of closest match | ORF alignment region (AA range) | Alignment region (AA range/total AA) | % Identity |
|---|---|---|---|---|---|---|
| csx001 | 327 | Hypothetical protein ORF48 Photorhabdus luminescens | AAL18484.1 | 31-279 | 7-263/277 | 28 |
| csx002 | 547 | Possible lipase ORF47 Photorhabdus luminescens | AAL18483.1 | 1-540 | 2-535/537 | 40 |
| csx003 | 1,050 | Possible VgrG related protein Ralstonia solanacearum | CAD17919.1 | 35-1047 | 16-999/1006 | 39 |
| csx004 | 398 | Possible invertase Arabidopsis thaliana | AAL08305.1 | 23-394 | 134-537/617 | 20 |
| csx005 | 350 | Hypothetical protein Azotobacter vinelandii | ZP00092060.1 | 146-332 | 32-249/687 | 30 |
| csx006 | 1132 | Possible alpha-amylase Pseudomonas syringae | AAO56261.1 | 2-673 | 5-653/1108 | 61 |
| csx007 | 390 | Alpha-amylase family protein Chlorobium tepidum | AAM73306.1 | 21-341 | 18-337/670 | 47 |
| csx008 | 568 | 1,4-Alpha-glucan branching enzyme Aquifex aeolicus | AAC06895.1 | 12-520 | 52-612/630 | 61 |
| csx009 | 274 | Hypothetical protein Xanthomonas campestris | NP636161.1 | 1-267 | 1-271/274 | 39 |
| csx010 | 472 | Proton glutamate symport protein Ralstonia metallidurans | ZP000247776.1 | 24-454 | 1-422/430 | 75 |
| csx011 | 241 | Transcriptional regulator Magnetospirillum magnetotacticum | ZP00055867.1 | 49-219 | 12-181/202 | 30 |
| csx012 | 334 | Multidrug resistance protein A Nostoc punctiforme | ZP001111687.1 | 2-319 | 56-382/393 | 37 |
| csx013 | 492 | Multidrug resistance protein B Nostoc punctiforme | ZP001111685.1 | 18-491 | 12-485/526 | 54 |
| csx014 | 509 | Multidrug resistance protein C Burkholderia funghorum | ZP00032009.1 | 12-508 | 5-510/516 | 35 |
| csx015 | 212 | Hypothetical protein Burkholderia fungorum | ZP00034179.1 | 1-206 | 1-204/210 | 41 |
| csx016 | 867 | FhuE, transport protein Xanthomonas campestris | AAM39477.1 | 125-867 | 1-746/746 | 43 |
| csx017 | 268 | Hypothetical protein Rhodobacter sphaeroides | ZP00005910.1 | 21-226 | 3-208/373 | 42 |
| csx018 | 404 | Hypothetical protein Mesorhizobium loti | BAB50278.1 | 26-402 | 27-403/404 | 58 |
| csx019 | 341 | Transcriptional regulator Mesorhizobium loti | BAB50279.1 | 1-326 | 1-319/328 | 55 |
| csx020 | 647 | Hypothetical protein Ralstonia metallidurans | ZP00025947.1 | 61-485 | 171-607/935 | 36 |
| csx021 | 426 | OruR regulator Pseudomonas aeruginosa | AAB94774.1 | 141-423 | 57-338/339 | 30 |
| csx022 | 603 | Hypothetical protein Caulobacter crescentus | AAK22724.1 | 35-583 | 537-1219/1245 | 25 |
| csx023 | 184 | Hypothetical protein Pseudomonas aeruginosa | AAK22724.1 | 8-184 | 3-187/195 | 31 |
| csx024 | 311 | Lactonizing lipase Pseudomonas mendocina | AAM14701 | 64-311 | 33-301/311 | 41 |
| csx026 | 647 | HSP70 Ralstonia solanacearum | CAD16342.1 | 1-644 | 37-684/688 | 83 |
| csx027 | 180 | HSP24 Burkholderia fungorum | ZP00030660.1 | 25-180 | 43-194/194 | 65 |
| csx028 | 649 | Lipoprotein Ralstonia solanacearum | NP519830.1 | 24-641 | 43-648/657 | 37 |
| bdhA | 284 | Beta-hydroxybutyrate dehydrogenase Ralstonia eutropha | AAD33952.1 | 25-284 | 1-259/259 | 78 |
| csx030 | 865 | Pyrophosphokinase Ralstonia solanacearum | CAD15278.1 | 131-865 | 6-746/746 | 50 |
| csx031 | 450 | Transposase Burkholderia fungorum | CAD17735.1 | 12-411 | 11-438/440 | 66 |
| csx032 | 483 | Hypothetical protein/chitinase Deinococcus radiodurans | AAF12325.1 | 159-332 | 451-641/818 | 31 |
| csx033 | 440 | Sensor histidine kinase Pseudomonas putida | AAN68322.1 | 5-412 | 2-429/454 | 30 |
| csx034 | 228 | Two-component response regulator Pseudomonas aeruginosa | AAG08162.1 | 1-222 | 1-216/221 | 54 |
| csx035 | 223 | Hypothetical protein Shewanella oneidensis | AAN56949.1 | 9-204 | 22-223/264 | 34 |
| csx036 | 615 | Hypothetical protein Pseudomonas aeruginosa | AAG05360.1 | 77-613 | 5-538/538 | 43 |
| csx038 | 433 | Phospoglycerate dehydrogenase Pseudomonas putida | AAN70720.1 | 25-433 | 1-409/409 | 69 |
| csx039 | 467 | Oxidoreductase Pseudomonas aeruginosa | NP249008.1 | 13-465 | 10-462/464 | 69 |
| csx040 | 499 | Hypothetical protein Geobacter metallireducens | ZP00081903.1 | 6-404 | 6-385/638 | 29 |
| csx041 | 213 | Antioxidant peroxidase Ralstonia solanacearum | CAD14284.1 | 3-213 | 2-212/212 | 84 |
| csx042 | 217 | Hypothetical protein/esterase Burkholderia fungorum | ZP00031463.1 | 22-196 | 83-250/271 | 44 |
| csx043 | 431 | Homocysteine synthase Xanthomonas campestris | AAM42339.1 | 4-426 | 3-425/428 | 81 |
| csx044 | 208 | Hypothetical protein Novosphingobium aromaticivorans | ZP00093590.1 | 3-204 | 89-293/297 | 51 |
| csx045 | 237 | Hypothetical protein Agrobacterium tumefaciens | AAK87332.1 | 1-223 | 30-238/321 | 36 |
| rbiA | 223 | Ribose 5-phosphate isomerase Ralstonia metallidurans | ZP00026886.1 | 9-223 | 1-211/211 | 62 |
| csx047 | 681 | Oligopeptidase A Burkholderia fungorum | ZP00028805.1 | 5-659 | 40-706/732 | 60 |
| csx048 | 281 | Methylenetetrahydrofolate dehydrogenase Ralstonia solanacearum | CAD15298.11 | 1-280 | 1-280/289 | 76 |
| csx049 | 215 | Two-component response regulator Ralstonia metallidurans | ZP00021742.1 | 5-201 | 53-250/254 | 69 |
| csx050 | 860 | Two-component sensor protein Burkholderia fungorum | ZP00028811.1 | 6-850 | 13-834/841 | 42 |
| csx051 | 848 | Pyruvate dehydrogenase E1 complex Ralstonia eutropha | AAA21598.1 | 9-823 | 12-821/895 | 63 |