TABLE 1.
Oligonucleotide primers designed and used in this study
Primer | Size of product (bp) | Primer use(s) | Sequence (5′-3′) | Temp (°C) |
---|---|---|---|---|
narF | 400 | Isolation of narB fragment | ACNGGYCARCCYAAYGCNATG | |
narR | Isolation of narB fragment | CKHCKYTCNSWRTTNGTCAT | ||
ntcAFor | 462 | Isolation of ntcA fragment, RT-PCR | GAACGCAACAAGACGATTTTCTT | 57.10 |
ntcARev | Isolation of ntcA fragment, RT-PCR | GCTTCGGCAATGGCTTGATG | 59.40 | |
glnAFor | 405 | RT-PCR | CACCGGTGAACCTCGTCTAT | 59.99 |
glnARev | RT-PCR | TCGATCCAGTTGTCGATGAA | 60.20 | |
narBFor | 352 | RT-PCR | GTTGGGTTACACCGAGCAGT | 60.04 |
narBRev | RT-PCR | AGCACCAATGGGTAGGTGTC | 59.85 | |
nirAFor | 288 | RT-PCR | TCGAAAACTCTCCACGCTCT | 60.13 |
nirARev | RT-PCR | GGGAAACGCTGCAATAATGT | 59.97 | |
nrtPFor | 244 | RT-PCR | CCTGACCTTTGTGGTCTGGT | 60.00 |
nrtPRev | RT-PCR | GAACACCAGGATCGACGAGT | 60.12 | |
rbcLFor | 193 | RT-PCR | CACCGACCTCGACTTCTACA | 58.88 |
rbcLRev | RT-PCR | TGCGAGTTGATGTTCTCGTC | 59.99 | |
nrtPtsp | NAa | Primer extension | GTGAGGTGAAGGGTTCGGTA | 59.40 |
nirAext | NA | Primer extension | CCCGGGGACCTTTGTCGCTA | 63.50 |
narBtsp | NA | Primer extension | TCACGGCTTGACCTTTCAC | 56.70 |
NA, not applicable.