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. 2011 May 23;6(5):e19862. doi: 10.1371/journal.pone.0019862

Table 8. Primers used for COBRA and sequencing.

Primer sequence Position(TSS = +1)
Offical symbol Offical full name Location Forward Reverse Forward 5′ Reverse 5′ Length
WNK2 Wnk lysine deficient protein kinase 2 9q22.3 TTTTGGTTTATAGAGATGGA CTTACAAAACAAAAACACCC −20 +240 255 bp
EMILIN2 Elastin microfibril interfacer 2 18p11.3 TATTGGAAATGTTGTAACGTAGATT ACCGTCTAAACTACCACATCC −250 +164 414 bp
TLX3 T-cell leukemia homeobox 3 5q35.1 GAGTTAATGAGAGGAGAGAGGTT AAAACCCTCCCAAATAACT −157 +220 377 bp
FOXE3 forkhead box E3 1p32 TTAAATATAGTGGGATGGGGTT CTCTAACTCCCGCCCTAA −60 +354 414 bp
GUCY1A2 guanylate cyclase 1, soluble, alpha 2 11q21-q22 TTTTTGTTTGGGTCGTAGTT TCTTCCTTCGAAACATACTACC −88 +326 414 bp
HIST1H4F histone cluster 1, H4f 6p21.3 TAAGGGGTTTTAGTGTGTAGTAAA AATAAAACTCAACCACCAAAAC −130 +250 380 bp
OVOL1 ovo-like 1(Drosophila) 11q13 GTAAGGGATTTCGTTTTTAGGG CTCCAATTCCTCTTACACGTAA −40 +277 277 bp
TM6SF1 transmembrane 6 superfamily member 1 15q24-q26 TTGGTAGGAGTATTGTAAGGACGT CTCACTCACTCATACTAAACCGC −214 +152 366 bp
TRIM58 tripartite motif-containing 58 1q44 GTTTGAGTGGTGGTTTTTTA TAACCGACTCCTACAAAAAAT −181 +72 253 bp
ADAM8 Adam metallopeptidase domain 8 10q26.3 TTTTATTTGTGTAAGGGAGGATG ACCCAAAAACCACTATACACCT −142 +287 429 bp
KIF17 kinesin family member 17 1p36.12 GGGGTTAGTTTTGGTTTCGT CATACCCTACCGCCTACAAA −24 +299 312 bp
GRASP GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein 12q13.13 TTTCGGAGTTTATAAAGGGAG CGACAAAATAATAATCCTCCAAC −142 +171 313 bp
UTF1 Undifferentiated embryonic cell transcription factor 1 10q26 GTTAGGATCGATTTTTTAGGA CCAACAACAACTCCGTCT −232 +174 406 bp
ATP8A2 ATPase, aminophospholipid transporter, class I, type 8A, member 2 13q12 TTCGGTTTTGCGTAATATTG CATCTTAAAAACTTTATCCAAACCT −238 +135 373 bp
ADCY5 adenylate cyclase 5 3q13.2-q21 GGGGTGTTAAGATGTTTCGT AAACTAAAACCGAAACCCC −226 +220 446 bp
EPHA4 EPH receptor A4 2q36.1 TTGGTAATGTTTTTAGTTCGTT ACCATTCACACTAAACTCCC −106 +187 293 bp
BOLL bol, boule-like (Drosophila) 2q33 CGTTAGGTGGTAGGTTTAGGG CCAAACCCTCAAAAACAAAC −25 +258 283 bp
HHS Vulnerability Disclosure