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. 2011 May 24;6(5):e19791. doi: 10.1371/journal.pone.0019791

Figure 2. System Setup.

Figure 2

(A) All-trans polyproline-20 molecular structure including Alexa 488 (green) and Alexa 594 (red) dyes attached by their corresponding linkers. The simulation box is shown in blue, terminal prolines used to restrain the position are depicted in black. (B) Fully solvated system is shown including Inline graphic (blue) and Inline graphic (yellow) ions.