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. 2011 May 24;6(5):e19791. doi: 10.1371/journal.pone.0019791

Table 1. Performed molecular dynamics simulations.

Proline Length Isomer Temperature Number of simulations
K
pro15 all-trans 293 10
pro15 single-cis 293 30
pro20 all-trans 293 20
pro20 all-trans 303 10
pro20 all-trans 313 10
pro20 single-cis 293 40
pro30 all-trans 293 10
pro30 single-cis 293 30
pro30 double-cis 293 61

Simulations are listed according to isomer and applied temperature. Single-cis simulation were carried out for all possible cis-isomer positions. For polyproline-30, in addition, a representative set of 61 isomers, randomly picked from the 870 possible isomers with two cis bonds, was simulated. All simulation lengths are Inline graphic summing up to a total sampling of Inline graphic.