Table 1.
Correlation between topological distance to source trees and topological error rates
| Scaffold Density |
Optimality Criterion |
FN | FP | RF | |||
|---|---|---|---|---|---|---|---|
| Mean | Range | Mean | Range | Mean | Range | ||
| SumFN | 0.401 | -0.890, 0.939 | 0.376 | -0.890, 0.926 | 0.391 | -0.890, 0.926 | |
| 25% | SumFP | 0.421 | -0.890, 0.939 | 0.421 | -0.890, 0.926 | 0.426 | -0.890, 0.926 |
| SumRF | 0.406 | -0.890, 0.939 | 0.395 | -0.890, 0.926 | 0.406 | -0.890, 0.926 | |
| SumFN | 0.544 | -0.203, 1.000 | 0.536 | -0.348, 0.971 | 0.541 | -0.203, 0.971 | |
| 50% | SumFP | 0.546 | -0.143, 1.000 | 0.539 | -0.257, 0.971 | 0.543 | -0.143, 0.971 |
| SumRF | 0.546 | -0.143, 1.000 | 0.539 | -0.257, 0.971 | 0.543 | -0.143, 0.971 | |
| SumFN | 0.593 | -1.000, 0.986 | 0.589 | -1.000, 0.986 | 0.591 | -1.000, 0.986 | |
| 75% | SumFP | 0.593 | -1.000, 0.986 | 0.589 | -1.000, 0.986 | 0.591 | -1.000, 0.986 |
| SumRF | 0.593 | -1.000, 0.986 | 0.589 | -1.000, 0.986 | 0.591 | -1.000, 0.986 | |
| SumFN | 0.447 | -0.789, 1.000 | 0.447 | -0.789, 1.000 | 0.447 | -0.789, 1.000 | |
| 100% | SumFP | 0.447 | -0.789, 1.000 | 0.447 | -0.789, 1.000 | 0.447 | -0.789, 1.000 |
| SumRF | 0.447 | -0.789, 1.000 | 0.447 | -0.789, 1.000 | 0.447 | -0.789, 1.000 | |
Results of Spearman rank-order correlations of SumFN, SumFP, and SumRF with the true FN, FP, and RF measures of supertrees estimated using six supertree methods.