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. Author manuscript; available in PMC: 2011 Sep 1.
Published in final edited form as: Genet Epidemiol. 2010 Sep;34(6):537–542. doi: 10.1002/gepi.20507

Fig. 3.

Fig. 3

Plot of the true correlation coefficient r2 versus the estimated correlation coefficient r2 of imputed SNPs in the WTCCC controls. The estimated and true correlation coefficients are highly correlated with r = 0.95 showing that the estimate is accurate. For SNPs with low minor allele frequency, the estimates of r2 are not reliable. SNP, single nucleotide polymorphism; MAF, minor allele frequency.