Table I. Relative affinitiesa of Nak peptides for the dNumb PTB domain.
Peptide | Sequence | Rel. affinity (%) |
---|---|---|
–6–4–20+2+4 | ||
Nak–c | G-F-S-N-M-S-F-E-D-F-P | 100 |
G-6A | A-F-S-N-M-S-F-E-D-F-P | 135 |
F-5A | G-A-S-N-M-S-F-E-D-F-P | 66 |
S-4A | G-F-A-N-M-S-F-E-D-F-P | 250 |
N–3A | G-F-S-A-M-S-F-E-D-F-P | N/D |
M-2A | G-F-S-N-A-S-F-E-D-F-P | 400 |
S-1A | G-F-S-N-M-A-F-E-D-F-P | 851 |
F0A | G-F-S-N-M-S-A-E-D-F-P | 3.5 |
E+1A | G-F-S-N-M-S-F-A-D-F-P | 82 |
D+2A | G-F-S-N-M-S-F-E-A-F-P | 27 |
F+3A | G-F-S-N-M-S-F-E-D-A-P | 92 |
Nak-AA | G-F-S-N-A-A-F-E-D-F-P | 1500 |
NakΔC | G-F-S-N-M-S-F-E | <1 |
Nak▿N | S-A-K-T-G-F-S-N-M-S-F-E-D-F-P | 95 |
N–TrkA/ | H-I-I-E-N-M-S-F-E-D-F-P | <1 |
C–Nak |
aRelative affinities were calculated according to the IC50 (concentration for 50% inhibition of binding) value of an individual peptide when competing against fluorescein-labeled peptide Nak–c for binding to the dNumb PTB domain. Relative affinities were normalized to that of the unlabeled Nak–c peptide, set to 100%. Repetition of the measurements produced values with <5% deviation from those reported.