Table 1.

Comparison of the performance of different versions of Protein Prospector Batch-Tag

	Version 5.3.3	Version 5.4.2	Improvement
Intact glycopeptides
E < 0.10	21	61	2.9
E < 0.05	16	42	2.63
E < 0.01	10	28	2.8
Partially deglycosylated peptides
E < 0.10	23	35	1.52
E < 0.05	21	30	1.42
E < 0.01	17	23	1.35