Table 2.
Some estimated parameters of molecular evolution
| Exon1 | Exon2 | Exon3 | Exon4 | Exon5 | Exon6 | DomainA | DomainB | |
|---|---|---|---|---|---|---|---|---|
| κ | 1.81901 | 2.88324 | 4.85122 | 1.92371 | 5.90266 | 2.18681 | 1.50398 | 1.45864 |
| α | 233.20* | 137.621 | 0.66662 | 0.66759 | 0.70397 | 3.14532 | 2.04029 | 0.70016 |
| r1/r2a | 9.34444 | 1.88055 | 0.46272 | 2.23894 | 1.06430 | 1.06613 | 0.43880 | 2.78380 |
| 7.19374 | 0.83409 | 0.46463 | 0.99973 | 1.78446 | 1.16327 | 0.45130 | 0.92838 | |
| r1/r2b | 6.65571 | 0.89836 | 1.00285 | 1.01670 | 0.46319 | 0.47190 | 0.55024 | 2.92695 |
| 0.39720 | 0.42971 | 0.71267 | 0.45403 | 0.59854 | 0.47959 | 0.74729 | 1.02247 | |
| r1/r2c | 16.75779 | 2.09060 | 1.40709 | 2.23928 | 0.77386 | 0.98396 | 0.73568 | 2.86161 |
| # | 0.45376 | 0.26278 | 0.03274 | 0.11204 | 0.21409 | 0.47428 | 0.74774 | 0.39388 |
To obtain stable local clock estimations, only two local clocks were specified in each run (see Figure 2B) and the remaining species had rate r0 = 1. *: a large unstable value. #: r2c was not stable because the clade (mouse, rat) was too close to the root.