Table 1.
Primer sequence | Purpose | Amplicon size | Efficiency for qPCR(%) |
---|---|---|---|
CPP2: (forward) 5 '-GAAGGTTCACTGT/CTGAAA/GGT-3' |
For cDNA internal fragment | 174 bp | --- |
CPP3: (reverse) 5'-GTTACTT/CTTGGCA/GAA TTCC-3' | |||
CPP4: (reverse) 5'-CGTACACCTTGCTGTAGATCCT-3' |
For 5'-RACE | --- | --- |
CPP5: (forward) 5'-TTCGTCACGTTCAGCACACGGT-3' |
For 3'-RACE | --- | --- |
CPP8: (forward) 5'-TCAGTACACAGTCCATCAACGG-3' |
For hybridization probe | 567 bp | --- |
CPP9: (reverse) 5'-TACCTAGGTGTCCAGCAGTAAG-3' | |||
*qRPL19P1 (forward) 5'-GCTTTGTTTGATCGTGTGTGA-3' |
For rpl19 qPCR | 105 bp | 101.4 |
*qRPL19P2 (reverse) 5'-AACATATCTCCCCCAATCCAG-3' | |||
*q28SP1 (forward) 5'-ACGTGAAACTGCCTAGGGCTC-3' |
For 28SrRNA qPCR | 200 bp | 97.8 |
*q28SP2 (reverse) 5'-TGGGACAAGCAACCAGATG-3' | |||
*qCPOP1 (forward) 5'-TTCGTCACGTTCAGCACACGGT-3' |
For cpo qPCR | 119bp | 102.4 |
*qCPOP2 (reverse) 5'-GTGTTACTCTTGGCGAATTCC-3' | |||
qRPL40P1 (forward) 5'-ACTGCCGCAAGAAGAAGTGT-3' |
For rpl40 qPCR | 104 bp | 98.2 |
qRPL40P2 (reverse) 5'-GGAATCAATCCAGAAGCACAA-3' |
indicates that the primer sequence was previously reported in Zhang and Denlinger (2011).