Table 1.

Case-control analysis of autoimmunity associated variants and JIA.

Locus	Variant	Alleles	Controls					Cases					OR (95%CI)	P
		1 2	N	1/1	1/2	2/2	MAF	N	1/1	1/2	2/2	MAF
TNFAIP3	rs10499194	C T	621	0.52	0.39	0.09	0.29	433	0.58	0.37	0.05	0.23	0.74 (0.61-0.91)	0.004
TNFAIP3	rs6920220	G A	619	0.67	0.29	0.04	0.19	441	0.59	0.37	0.04	0.23	1.30 (1.05-1.61)	0.015
RSBN1	rs6679677	C A	642	0.81	0.18	0.01	0.10	444	0.77	0.21	0.02	0.13	1.28 (0.98-1.68)	0.070
C12orf30	rs17696736	A G	631	0.36	0.48	0.16	0.41	443	0.30	0.51	0.20	0.45	1.20 (1.01-1.43)	0.041
TRAF1/C5	rs3761847	G A	641	0.34	0.49	0.18	0.42	440	0.34	0.47	0.19	0.42	1.02 (0.86-1.21)	0.818
IL2RA	rs2104286	A G	634	0.55	0.39	0.06	0.25	438	0.53	0.41	0.05	0.26	1.04 (0.85-1.27)	0.693
STAT4	rs7574865	G T	641	0.56	0.39	0.04	0.24	443	0.51	0.43	0.07	0.28	1.24 (1.02-1.51)	0.029

MAF: Minor allele frequency.

Odds ratio for the carriage of allele 2 are shown.