Table 1.
Interatomic distances in optimized FeMo-coN for selected oxidation states. Experimental distances are given for the average of four FeMo-co structures from the crystal structure2 along with those from two EXAFS studies.6, 72 Superscripts (Fe) and (Mo) refer to the [4Fe-3S] and [Mo-3Fe-3S] subclusters, respectively; (b) denotes the bridging sulfides. HC(Ohydroxyl) refers to the deprotonated (O−) or protonated (OH) hydroxyl group of the homocitrate ligand.
| calculated distances (Å) | experiment | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| 2FeII-5FeIII-X | 4FeII-3FeIII-X | Ref. 2, 6, 72 | ||||||||
| X = | C4− | N3− | C4− | N3− | O2− | |||||
| HC(Ohydroxyl) | O− | OH | O− | OH | O− | OH | O− | OH | O− | |
| S(Cys)-Fe | 2.22 | 2.20 | 2.20 | 2.18 | 2.30 | 2.28 | 2.27 | 2.26 | 2.25 | 2.27 |
| Fe-S(Fe) | 2.26 | 2.25 | 2.25 | 2.25 | 2.32 | 2.32 | 2.31 | 2.31 | 2.32 | 2.28 |
| Fe…Fe(Fe) | 2.63 | 2.62 | 2.63 | 2.63 | 2.73 | 2.72 | 2.73 | 2.72 | 2.73 | 2.66 |
| S(Fe)-Fe(Fe) | 2.28 | 2.27 | 2.28 | 2.27 | 2.32 | 2.31 | 2.31 | 2.30 | 2.30 | 2.27 |
| Fe(Fe)-S(b) | 2.19 | 2.19 | 2.19 | 2.19 | 2.24 | 2.23 | 2.23 | 2.23 | 2.22 | 2.23 |
| Fe(Fe)…Fe(Fe) | 2.65 | 2.64 | 2.69 | 2.68 | 2.66 | 2.65 | 2.67 | 2.67 | 2.80 | 2.65 |
| Fe(Fe)-X | 2.01 | 2.00 | 2.03 | 2.03 | 2.01 | 2.00 | 2.01 | 2.01 | 2.10 | 1.98 |
| Fe(Fe)…Fe(Mo) | 2.59 | 2.57 | 2.58 | 2.57 | 2.62 | 2.61 | 2.62 | 2.61 | 2.76 | 2.59 |
| Fe(Mo)…Fe(Mo) | 2.66 | 2.66 | 2.68 | 2.68 | 2.61 | 2.60 | 2.63 | 2.63 | 2.74 | 2.61 |
| Fe(Mo)-S(b) | 2.20 | 2.19 | 2.20 | 2.18 | 2.24 | 2.22 | 2.23 | 2.21 | 2.23 | 2.22 |
| Fe(Mo)-X | 2.00 | 2.00 | 2.00 | 2.00 | 2.01 | 2.00 | 2.02 | 2.01 | 2.12 | 2.02 |
| Fe(Mo)…Mo | 2.76 | 2.72 | 2.78 | 2.74 | 2.74 | 2.70 | 2.75 | 2.71 | 2.76 | 2.69 |
| S(Mo)-Fe(Mo) | 2.28 | 2.28 | 2.29 | 2.29 | 2.29 | 2.28 | 2.29 | 2.28 | 2.28 | 2.23 |
| S(Mo)-Mo | 2.40 | 2.37 | 2.40 | 2.37 | 2.39 | 2.37 | 2.40 | 2.38 | 2.41 | 2.35 |
| Mo-N(His) | 2.25 | 2.22 | 2.24 | 2.21 | 2.26 | 2.24 | 2.26 | 2.22 | 2.24 | 2.30 |
| Mo-Ocarboxyl | 2.12 | 2.11 | 2.10 | 2.08 | 2.16 | 2.16 | 2.14 | 2.13 | 2.11 | 2.18 |
| Mo-Ohydroxyl | 2.01 | 2.22 | 1.98 | 2.20 | 2.05 | 2.26 | 2.03 | 2.23 | 2.01 | 2.20 |
| avg. Mo-O/N | 2.13 | 2.19 | 2.11 | 2.16 | 2.16 | 2.22 | 2.14 | 2.19 | 2.12 | 2.23 |
| Fe…Mo | 7.02 | 6.94 | 7.02 | 6.95 | 7.17 | 7.11 | 7.17 | 7.10 | 7.22 | 7.00 |
|
| ||||||||||
| avg. error | −0.01 | −0.02 | −0.01 | −0.01 | 0.02 | 0.02 | 0.02 | 0.02 | 0.05 | |
| RMS dev. | 0.06 | 0.04 | 0.07 | 0.05 | 0.06 | 0.04 | 0.07 | 0.04 | 0.11 | |
| core avg. error | 0.01 | 0.00 | 0.02 | 0.01 | 0.03 | 0.02 | 0.03 | 0.02 | 0.07 | |
| core RMS dev. | 0.04 | 0.03 | 0.05 | 0.04 | 0.04 | 0.03 | 0.04 | 0.03 | 0.09 | |