Table 1.
Percentage of tractable trees by comparison algorithm
| Phylome | TreeKO (%) | TOPD/ FMTS (%) | RF (%) | RF + pruning (%) |
|---|---|---|---|---|
| P60 | 100 | 100 | 0 | 22 |
| P21 | 100 | 100 | 0 | 36 |
| P12a | 100 | 100 | 14 | 38 |
| P12b | 100 | 100 | 2 | 27 |
Percentage of gene trees in a given phylome that is suitable for comparison by any given method. Columns represent the four compared programs: treeKO, TOPD/FMTS, RF and RF with an initial pruning step. Rows represent each of the fours yeast phylomes with different taxonomic coverage that can be found in phylomeDB (32).