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. 2011 Jan 25;39(10):4275–4283. doi: 10.1093/nar/gkr008

Table 1.

Compilation of transition amplitudes and torque dependency of cruciform extrusion and refolding rates for the inverted repeats studied in this article

DNA Ionic conditions Ncruciform (bp) d(ln kr)/dn (kBT/turn) d(ln kf)/dn (kBT/turn) d(ln kr)/d (ln kf) = nr/nf DNA unwinding in TS (bp)
WT Charomid X 10 mM Phosphate buffer 34 ± 1 (74) 0.71 ± 0.014 0.31 ± 0.015 2.3 ± 0.1 10 ± 1
10 mM Phosphate Buffer + 50 mM NaCl 36 ± 1 (58) 0.30 ± 0.01 0.10 ± 0.01 2.9 ± 0.6 9 ± 1
Mutated Charomid X 10 mM Phosphate buffer 34 ± 1 (51) 0.91 ± 0.02 0.43 ± 0.02 2.1 ± 0.11 11 ± 1
10 mM Phosphate buffer + 50 mM NaCl 36 ± 1 (65) 0.11 ± 0.02 0.11 ± 0.02 1.0 ± 0.25 18 ± 3
ColE1-5b 11 mM Phosphate buffer 30 ± 1 0.39 ± 0.05 1.68 ± 0.05 4.3 ± 0.5 5.8 ± 0.8
ColE1-8b 11 mM Phosphate buffer 32 ± 1 0.61 ± 0.13 1.57 ± 0.13 2.6 ± 0.5 9.1 ± 1.5

For unwinding amplitudes, the number in parenthesis is the number of events used to calculate the average.