Table 1.
Statistics of high-throughput bisulfite sequencing data for Alu and flanking sequence
Sample ID | NC1 | NC2 | PN1 | PN2 | PA1 | PA2 | RL1 | RL2 |
---|---|---|---|---|---|---|---|---|
Number of Loci | 2530 | 3678 | 3076 | 2334 | 3730 | 2958 | 2153 | 2965 |
Number of sequence reads | 70 154 | 102 405 | 76 033 | 52 652 | 84 603 | 71 289 | 46 938 | 77 134 |
Number of CpG sites | 402 506 | 653 650 | 467 705 | 313 967 | 542 630 | 424 410 | 288 981 | 435 017 |
Average reads per locus | 27.7 | 27.8 | 24.7 | 22.6 | 22.7 | 24.1 | 21.8 | 26.0 |
Average CpG sites per reads | 5.7 | 6.4 | 6.2 | 6.0 | 6.4 | 6.0 | 6.2 | 5.6 |