Table 1. Annotation of the B. rhizoxinica T3SS gene cluster.
ORF | Gene | Proposed function | R. solanacearum homolog | Percent identity (BLASTP) |
---|---|---|---|---|
1 | sctC | Outer membrane ring (secretin) | hrcC | 41 |
2 | hrpB | Regulator | hrpB | 37 |
3 | Unknown | — | ||
4 | Unknown | — | ||
5 | sctT | Inner membrane protein | hrcT | 43 |
6 | sctO | Unknown | hrpD | — |
7 | sctN | ATPase | hrcN | 71 |
8 | sctL | ATPase-associated regulator | hrpF | 31 |
9 | sctK | Unknown | hrpH | — |
10 | sctJ | Inner membrane ring (lipoprotein) | hrcJ | 58 |
11 | sctI | Unknown | hrpJ | — |
12 | sctG | Unknown | hrpK | — |
13 | sctU | Inner membrane protein | hrcU | 47 |
14 | sctV | Inner membrane protein | hrcV | 59 |
15 | hpaP | Unknown | hpaP | 35 |
16 | sctQ | Putative cytosolic ring | hrcQ | 29 |
17 | sctR | Inner membrane protein | hrcR | 63 |
18 | sctS | Inner membrane protein | hrcS | 59 |
19 | Pilus assembly | hrpV | — | |
20 | sctD | Inner membrane ring | hrpW | 26 |
21 | sctE | Pilus assembly | hrpX | — |
22 | sctF | Pilus | hrpY | — |
23 | hpaB | Unknown | hpaB | 56 |