Table 1. Operational taxonomical units of families Lachnospiraceae, Ruminococcaceae unclassified Clostridiales (Clostridium cluster XIV) enriched in the interfold region.
| Family | Number of 16S rRNA gene sequences | Similarity range | Best match (type strain)a |
|---|---|---|---|
| Lachnospiraceae | 17 | 0.91–0.83 | Robinsoniella peoriensis; PPC31; AF445285 |
| 12 | 0.90–0.87 | Clostridium jejuense; HY-35-12; AY494606 | |
| 7 | 0.93–0.90 | Coprococcus comes; ATCC 27758; EF031542 | |
| 4 | 0.90–0.87 | Roseburia intestinalis; L1-82; AJ312385 | |
| 3 | 0.93–0.90 | Dorea longicatena; III-35; AJ132842 | |
| 3 | 0.91–0.88 | Marvinbryantia formatexigens; I-52; AJ505973 | |
| 1 | 0.90 | Anaerostipes caccae; L1–92; AJ270487 | |
| 1 | 0.90 | Clostridium lavalense; CCRI-9842; EF564277 | |
| 1 | 0.88 | Clostridium phytofermentans ISDg; CP000885 | |
| 1 | 0.90 | Coprococcus eutactus; ATCC 27759; EF031543 | |
| 1 | 0.92 | Dorea formicigenerans; L34619 | |
| 1 | 0.88 | Hespellia porcina; PPC80; AF445239 | |
| 1 | 0.79 | Parasporobacterium paucivorans; SYR1; AJ272036 | |
| 1 | 0.91 | Roseburia faecis M72/1; AY305310 | |
| 1 | 0.87 | Roseburia hominis A2-183; AJ270482 | |
| 1 | 0.90 | Shuttleworthia satelles; D143K-13; AF399956 | |
| 1 | 0.88 | Sporobacterium olearium; DSM 12504; AF116854 | |
| Ruminococcaceae | 5 | 0.93–0.85 | Anaerobic bacterium ED-Mt61/PYG-s6; DQ100449 |
| 5 | 0.94–0.91 | Bacteroides capillosus; ATCC 29799; AY136666 | |
| 5 | 0.91–0.89 | Ruminococcus lactaris; ATCC 29176; L76602 | |
| 4 | 0.93–0.91 | Butyricicoccus pullicaecorum; 25-3; EU410376 | |
| 4 | 0.94–0.93 | Oscillibacter valericigenes; Sjm18–20; AB238598 | |
| 2 | 0.92–0.90 | Anaerotruncus colihominis; 14565; AJ315980 | |
| 1 | 0.92 | Papillibacter cinnamivorans; DSM12816; AF167711 | |
| Incertae Sedis XIV | 16 | 0.93–0.89 | Blautia schinkii; B; CIP 105464; DSM 10518; X94965 |
| 3 | 0.93–0.90 | Blautia hydrogenotrophica; S5a36; X95624 | |
| 2 | 0.92–0.89 | Blautia producta; ATCC 27340; L76595 | |
| Eubacteriaceae | 2 | 0.93 | Eubacterium plautii; ATCC 29863; AY724678 |
| Gracilibacteraceae | 1 | 0.89 | Gracilibacter thermotolerans; JW/YJL-S1; DQ117465 |
| Veillonellaceae | 3 | 0.96–0.90 | Veillonella parvula; ATCC 10790; AY995767 |
| 1 | 0.96 | Veillonella sp. NVG 100cf; EF108443 | |
| Unclassified | 23 | 0.93–0.84 | Clostridium aldenense; RMA 9741; DQ279736 |
| Clostridiales | 1 | 0.90 | Clostridium clostridioforme; M59089 |
| 1 | 0.91 | Clostridium sp. N6; AJ582080 |
Similarity score reported by SeqMatch at the RDP.
a
Closest matches for known type strains were obtained using the Seqmatch search at RDP (see Material and methods). Species, strain ID and accession number are provided.