Skip to main content
Nucleic Acids Research logoLink to Nucleic Acids Research
. 1993 Nov 25;21(23):5485–5488. doi: 10.1093/nar/21.23.5485

NMR evidence for the RNA stem-loop structure involved in the transcription attenuation of E. coli trp operon.

V Ramesh 1
PMCID: PMC310590  PMID: 7505428

Abstract

High field 1H-NMR studies of a synthetic 21-mer RNA fragment, corresponding to residues +114 to +134 within the trp leader mRNA transcript, have been carried out. Seven well resolved imino proton resonances corresponding to six C-G and one A-U hydrogen bonded base pairs, together with their characteristic NOE patterns can be identified in the NMR spectrum. This experimental result provides direct evidence for the postulated stem-loop secondary structure, 3:4, which has been reported to act as a transcription termination signal for RNA polymerase.

Full text

PDF
5487

Selected References

These references are in PubMed. This may not be the complete list of references from this article.

  1. Davis P. W., Thurmes W., Tinoco I., Jr Structure of a small RNA hairpin. Nucleic Acids Res. 1993 Feb 11;21(3):537–545. doi: 10.1093/nar/21.3.537. [DOI] [PMC free article] [PubMed] [Google Scholar]
  2. Heus H. A., Pardi A. Nuclear magnetic resonance studies of the hammerhead ribozyme domain. Secondary structure formation and magnesium ion dependence. J Mol Biol. 1991 Jan 5;217(1):113–124. doi: 10.1016/0022-2836(91)90615-d. [DOI] [PubMed] [Google Scholar]
  3. Lee F., Yanofsky C. Transcription termination at the trp operon attenuators of Escherichia coli and Salmonella typhimurium: RNA secondary structure and regulation of termination. Proc Natl Acad Sci U S A. 1977 Oct;74(10):4365–4369. doi: 10.1073/pnas.74.10.4365. [DOI] [PMC free article] [PubMed] [Google Scholar]
  4. Luisi B. F., Sigler P. B. The stereochemistry and biochemistry of the trp repressor-operator complex. Biochim Biophys Acta. 1990 Apr 6;1048(2-3):113–126. doi: 10.1016/0167-4781(90)90047-6. [DOI] [PubMed] [Google Scholar]
  5. Nikonowicz E. P., Pardi A. An efficient procedure for assignment of the proton, carbon and nitrogen resonances in 13C/15N labeled nucleic acids. J Mol Biol. 1993 Aug 20;232(4):1141–1156. doi: 10.1006/jmbi.1993.1466. [DOI] [PubMed] [Google Scholar]
  6. Oxender D. L., Zurawski G., Yanofsky C. Attenuation in the Escherichia coli tryptophan operon: role of RNA secondary structure involving the tryptophan codon region. Proc Natl Acad Sci U S A. 1979 Nov;76(11):5524–5528. doi: 10.1073/pnas.76.11.5524. [DOI] [PMC free article] [PubMed] [Google Scholar]
  7. Puglisi J. D., Tinoco I., Jr Absorbance melting curves of RNA. Methods Enzymol. 1989;180:304–325. doi: 10.1016/0076-6879(89)80108-9. [DOI] [PubMed] [Google Scholar]
  8. Puglisi J. D., Wyatt J. R., Tinoco I., Jr Solution conformation of an RNA hairpin loop. Biochemistry. 1990 May 1;29(17):4215–4226. doi: 10.1021/bi00469a026. [DOI] [PubMed] [Google Scholar]
  9. Reid B. R. NMR studies on RNA structure and dynamics. Annu Rev Biochem. 1981;50:969–996. doi: 10.1146/annurev.bi.50.070181.004541. [DOI] [PubMed] [Google Scholar]
  10. Varani G., Tinoco I., Jr RNA structure and NMR spectroscopy. Q Rev Biophys. 1991 Nov;24(4):479–532. doi: 10.1017/s0033583500003875. [DOI] [PubMed] [Google Scholar]
  11. Williamson M. P., Marion D., Wüthrich K. Secondary structure in the solution conformation of the proteinase inhibitor IIA from bull seminal plasma by nuclear magnetic resonance. J Mol Biol. 1984 Mar 5;173(3):341–359. doi: 10.1016/0022-2836(84)90125-6. [DOI] [PubMed] [Google Scholar]
  12. Wu J. J., Marshall A. G. 500-MHz proton NMR evidence for two solution structures of the common arm base-paired segment of wheat germ 5S ribosomal RNA. Biochemistry. 1990 Feb 20;29(7):1722–1730. doi: 10.1021/bi00459a009. [DOI] [PubMed] [Google Scholar]
  13. Yanofsky C. Attenuation in the control of expression of bacterial operons. Nature. 1981 Feb 26;289(5800):751–758. doi: 10.1038/289751a0. [DOI] [PubMed] [Google Scholar]
  14. Yanofsky C. Transcription attenuation. J Biol Chem. 1988 Jan 15;263(2):609–612. [PubMed] [Google Scholar]

Articles from Nucleic Acids Research are provided here courtesy of Oxford University Press

RESOURCES