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. 2011 May 4;27(12):1603–1609. doi: 10.1093/bioinformatics/btr257

Fig. 4.

Fig. 4.

Topology of the null target motif HMM. The LL (leading), L and TL (trailing) states emit low information content columns before, within and after the ‘core’, respectively. The H state emits columns with high information content. The I and T state are the silent initial and terminal states, respectively.