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. 2011 May 5;27(12):1706–1707. doi: 10.1093/bioinformatics/btr258

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© The Author(s) 2011. Published by Oxford University Press.

This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/2.5), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited.

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Fig. 1. — Illustration of an alignment analysis with BoulderALE. Users upload a Stockholm or FASTA-formatted sequence file along with tab-delimited base pair and motif files. Next, users have options to annotate and edit their alignment, and can produce visualizations to aid in their analysis.