Table 1.
Taxonomic Group | Position (nts)a | Conserved Regions |
---|---|---|
AHL-lactonase gene | ||
Allb | 467-484 | TGGTC[AG]AAATGCAGATGGGT |
557-571 | ATTTCGACCATGCCG | |
737-755 | AGCGATCACGCGTGTCC | |
Actinobacteria | 560-570 | TCGACCACG[CG]CG |
Firmicutes | 535-542 | TA[CT]ATTA |
559-566 | TTCGATCA | |
774-780 | ATATCGT | |
Alphaproteobacteria | 562-571 | GACCAT[ACG]TCGT |
Betaproteobacteria | 521-523 | CGG[AC]CG |
681-689 | CGCAGACCA | |
Gammaproteobacteria | 527-534 | ATGTCGAG |
548-552 | CCCAT | |
Deltaproteobacteria | 518-522 | A[GT]CCC |
Euryarchaeota | 560-569 | T[CT]GACCACGC |
Ascomycota | 338-347 | TTGAXCATCC |
520-539 | ATCAAAGACGTCAAGGCAGT | |
550-571 | CA[CT]TTACATCTCGA[CT]CACGCAG | |
628-633 | CACGAG | |
AHL-acylase gene | ||
Allc | 236-254 | TGATCGCCGAAATCCGGCG |
1892-1907 | GTATGGGTCCAGGCCA | |
Actinobacteria | 704-713 | TACCGGGTCG |
1177-1181 | AC[AC]C[CG]GTCA[CG]C | |
1208-1217 | CCA[CG]GAGCTG | |
Cyanobacteria | 1522-1527 | TTTGAAA |
Alphaproteobacteria | 486-495 | TCGATGCG |
Betaproteobacteria | 328-340 | GCGCAGGCAACC |
Gammaproteobacteria | 309-320 | CGGCATCGGTTA |
586-595 | GGCTTCAACC | |
Bacteroidetes | 1490-1497 | TC[CG]GCATA |
Nucleotides in the gene from 5’ to 3’.
Gene sequences from taxonomic groups listed under AHL-lactonase gene.
Gene sequences from taxonomic groups listed under AHL-acylase gene.