Table II.
OR of colorectal adenoma for polymorphisms in DNA repair genes with P < 0.01, PLCO Cancer Screening Trial baseline exam 1993–2001
Caucasian subjectsa |
All subjectsb |
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SNP | Gene | Risk allele | RAFc | OR | 95% CI | P | OR | 95% CI | P |
rs9350 T→C | EXO1 | C | 0.82 | 1.30 | 1.11–1.51 | 0.001 | 1.24 | 1.07–1.44 | 0.003 |
rs400727 T→G | FANCC | G | 0.91 | 1.44 | 1.15–1.80 | 0.002 | 1.40 | 1.14–1.72 | 0.001 |
rs3762053 G→T | RAD54B | G | 0.16 | 1.25 | 1.09–1.44 | 0.002 | 1.23 | 1.07–1.41 | 0.004 |
rs11614717 T→G | POLE | T | 0.14 | 1.27 | 1.09–1.49 | 0.002 | 1.24 | 1.07–1.44 | 0.005 |
rs4703564 T→C | XRCC4 | C | 0.89 | 1.42 | 1.13–1.78 | 0.002 | 1.31 | 1.09–1.59 | 0.005 |
rs242448 A→T | FANCC | T | 0.92 | 1.42 | 1.13–1.78 | 0.002 | 1.41 | 1.14–1.75 | 0.002 |
rs4658535 A→G | EXO1 | G | 0.79 | 1.26 | 1.08–1.45 | 0.002 | 1.25 | 1.09–1.42 | 0.002 |
rs1699499 C→T | FANCC | T | 0.97 | 1.70 | 1.20–2.40 | 0.003 | 1.67 | 1.19–2.35 | 0.003 |
rs17503908 G→T | ATM | G | 0.08 | 1.34 | 1.11–1.62 | 0.003 | 1.33 | 1.10–1.60 | 0.003 |
rs10412761 G→A | ERCC1 | A | 0.57 | 1.19 | 1.06–1.33 | 0.003 | 1.19 | 1.07–1.33 | 0.001 |
rs3885676 C→T | XRCC4 | T | 0.87 | 1.36 | 1.11–1.66 | 0.003 | 1.31 | 1.10–1.56 | 0.003 |
rs4465523 A→G | APEX1 | A | 0.33 | 1.18 | 1.05–1.32 | 0.006 | 1.20 | 1.08–1.34 | 0.001 |
rs17277375 T→C | APEX1 | T | 0.32 | 1.18 | 1.05–1.33 | 0.006 | 1.19 | 1.06–1.33 | 0.003 |
rs2301180 C→T | DCLRE1A | T | 0.71 | 1.18 | 1.05–1.34 | 0.006 | 1.16 | 1.03–1.30 | 0.01 |
rs6864054 G→A | XRCC4 | A | 0.94 | 1.44 | 1.11–1.87 | 0.006 | 1.33 | 1.05–1.70 | 0.02 |
rs5744990 A→G | POLE | A | 0.13 | 1.24 | 1.06–1.45 | 0.006 | 1.23 | 1.06–1.43 | 0.007 |
rs6573333 T→G | MNAT1 | G | 0.98 | 2.36 | 1.26–4.40 | 0.007 | 1.18 | 0.80–1.74 | 0.39 |
rs3102854 G→A | RAD54B | G | 0.24 | 1.19 | 1.05–1.35 | 0.007 | 1.18 | 1.04–1.33 | 0.009 |
rs7829886 A→T | RAD54B | T | 0.73 | 1.19 | 1.05–1.35 | 0.008 | 1.16 | 1.03–1.31 | 0.02 |
rs12050102 T→G | APEX1 | T | 0.33 | 1.17 | 1.04–1.32 | 0.008 | 1.19 | 1.06–1.33 | 0.002 |
rs4150628 G→A | GTF2H1 | G | 0.44 | 1.16 | 1.04–1.23 | 0.008 | 1.14 | 1.03–1.27 | 0.02 |
rs228606 T→G | ATM | T | 0.39 | 1.16 | 1.04–1.30 | 0.008 | 1.15 | 1.04–1.28 | 0.009 |
rs3212986 A→C | ERCC1 | C | 0.74 | 1.19 | 1.04–1.35 | 0.008 | 1.19 | 1.05–1.34 | 0.006 |
rs10838192 C→T | ALKBH3 | C | 0.21 | 1.19 | 1.05–1.36 | 0.009 | 1.19 | 1.04–1.35 | 0.008 |
rs828918 G→C | XRCC5 | G | 0.13 | 1.24 | 1.06–1.45 | 0.009 | 1.19 | 1.02–1.38 | 0.03 |
rs3131382 T→C | MSH5 | C | 0.93 | 1.36 | 1.08–1.71 | 0.009 | 1.37 | 1.09–1.72 | 0.007 |
rs1150793 G→A | MSH5 | G | 0.06 | 1.34 | 1.08–1.67 | 0.009 | 1.26 | 1.02–1.55 | 0.03 |
rs707915 A→T | MSH5 | A | 0.06 | 1.34 | 1.08–1.67 | 0.009 | 1.26 | 1.02–1.55 | 0.03 |
rs11615 G→A | ERCC1 | A | 0.58 | 1.16 | 1.04–1.31 | 0.009 | 1.15 | 1.02–1.28 | 0.02 |
rs5744903 T→C | POLE | T | 0.06 | 1.32 | 1.07–1.62 | 0.01 | 1.28 | 1.04–1.57 | 0.02 |
OR per risk allele assuming a log-additive model, adjusted for age and sex.
OR per risk allele assuming a log-additive model, adjusted for age, sex and race.
RAF, risk allele frequency among Caucasian controls.