Table 3.

Novel chicken miRNAs predicted by miRDeep

miRNA ID	chr	strand	start	end	Layer*	Broiler*
gga-miR-N1	chr3	+	4348337	4348358	135	62
gga-miR-N2	chrUn_random	-	13277374	13277395	2	52
gga-miR-N3	chrUn_random	+	30704197	30704218	29	21
gga-miR-N4	chr17	+	2477065	2477087	18	14
gga-miR-N5	chr27	+	1117232	1117255	22	6
gga-miR-N6	chr2	+	103042957	103042979	26	0
gga-miR-N7	chr18	-	5042929	5042952	20	5
gga-miR-N8	chr4	-	3214463	3214484	23	0
gga-miR-N9	chr6	+	31550357	31550378	18	4
gga-miR-N10	chr1	-	180215042	180215065	14	3
gga-miR-N11	chr4	-	51257851	51257872	7	9
gga-miR-N12	chrZ	-	28247215	28247238	12	4
gga-miR-N13	chr3	+	85117942	85117965	13	1
gga-miR-N14	chr4	+	563352	563373	11	3
gga-miR-N15	chr26	-	2669812	2669834	11	2
gga-miR-N16	chr3	+	59307968	59307990	5	7
gga-miR-N17	chr18	-	4116255	4116279	6	5
gga-miR-N18	chr3	+	724977	724994	0	7
gga-miR-N19	chr4	+	2151238	2151261	4	3
gga-miR-N20	chr7	-	37893831	37893851	6	1
gga-miR-N21	chr19	+	4862173	4862194	1	4
gga-miR-N22	chr20	-	10896392	10896413	5	0
gga-miR-N23	chr15	-	11255901	11255922	4	0
gga-miR-N24	chr24	+	2618818	2618840	3	1
gga-miR-N25	chr27	-	4426392	4426414	4	0
gga-miR-N26	chr4	+	16625715	16625736	3	1
gga-miR-N27	chrUn_random	-	40250702	40250728	3	1
gga-miR-N28	chr1	+	52701699	52701723	2	1
gga-miR-N29	chr10	-	16415151	16415173	1	1
gga-miR-N30	chr2	+	133303756	133303776	1	1
gga-miR-N31	chr27	-	3957524	3957545	2	0
gga-miR-N32	chr3	-	49536173	49536194	1	1
gga-miR-N33	chr7	+	12850964	12850988	0	2

*Sequenced read-numbers are presented.