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. Author manuscript; available in PMC: 2011 Jun 3.
Published in final edited form as: Nat Protoc. 2010 Sep 30;5(10):1697–1708. doi: 10.1038/nprot.2010.126

Figure 10.

Figure 10

Optimization with Coot. Coot was used to adjust main chain and side chain atom positions to optimize the fit of the atomic model in the density map of Mm-cpn. Shown in a is a screenshot using the ‘Real Space Refine Zone’ tool in Coot, whereas b shows the corresponding Ramachandran plot.