Table 1.

Results of Scanning for SNPs using Methods 1 and 2

Xq	GenBank STS accession no.	No. of bases sequenced	Method 1		Method 2
rare SNPsa	informative SNPsb	rare SNPsa	informative SNPsb
3840	G42862	870	0	1	1	1
3841	G42863	755	0	1	0	1
3843	N.S.	200		N.U.
3844	G42864	790	0	0	0	0
3845	G42865	750	0	0	0	0
3846	G42866	865	0	1	1	1
3847	G42867	850	0	1	0	1
3849	G42868	829	0	1	0	1
3851	G42869	650	0	0	0	0
3852	G42870	773	0	0	0	0
3853	G42871	500	0	0	0	0
3855	G42872	790	0	1	0	1
3856	G42873	830	0	0	0	0
3857	N.S.	500		N.U.
3858	G42874	820	0	0	1	0
3859	G42875	680	0	0	0	0
3860	G42876	470	0	0	0	0
3861	G42877	520	0	0	0	0
3862	G42878	485	0	1	0	1
3863	G42879	880	0	0	0	0
3864	G42880	725	0	0	0	0
3865	G42881	445	0	0	0	0
3866	G42882	605	0	0	0	0
3867	G42902	585	0	0	0	0
3868	G42883	730	0	1	0	1
3870	G42884	850	0	0	0	0
3871	G42885	930	0	0	1	0
3872	G42886	900	0	0	0	0
3875	G42887	900	0	2	0	2
3879	G42888	860	0	1	0	1
3880	G42903	700	0	0	0	0
3881	G42889	860	0	0	0	0
3884	G42890	525	0	0	0	0
3885	G42891	750	1	0	1	0
3886	G42892	800	0	0	2	0
3888	G42893	750	0	0	1	0

(N.S.) Not submitted; (N.U.) not unique. 

^aRare SNPs are those with allelic frequencies <0.20. 

^bInformative SNPs are those with allelic frequencies >0.20.