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. Author manuscript; available in PMC: 2012 Jun 3.
Published in final edited form as: J Proteome Res. 2011 May 5;10(6):2882–2888. doi: 10.1021/pr200074h

Table 1.

Run times for FastPaSS, SpectraST, P3, and Tandem. Reported times, in seconds, are the average of triplicate runs. The individual run times are presented in Supplemental Materials.

#
spectra		 FP FP* ST FP1 ST1 P3 Tandem
tryptic		 Tandem
semi
10K 8.3 18.0 68.3 42.0 1096.7 16.0 74.0 1214.3
20K 11.0 28.0 93.3 46.3 1121.7 32.7 156.7 2582.7
30K 13.7 39.0 121.0 49.0 1149.3 52.3 272.0 4494.3
40K 16.7 49.0 145.7 52.3 1173.3 72.0 404.0 6552.7
50K 19.0 59.0 173.3 54.3 1200.7 92.0 518.3 8507.3

FP=FastPaSS, ST=SpectraST, FP1=FastPaSS uncached, ST1=SpectraST uncached. All analysis were run on an AMD/Tesla workstation with the exception of the column labeled “FP*” which were run on an AMD/8600GTS personal computer.