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. 1999 Oct;9(10):936–949. doi: 10.1101/gr.9.10.936

Table 3.

Pairs of Variant Alleles Observed to Have Suggestively Significant Association with the Severity of Atherosclerosis as Represented by Gensini Scores

Marker I (background) Marker 2 (additional variant) Q1 vs Q5



combined gender females only


apoE (3/4, 4/4) CBS278thr/68-bp I *
apoCIII (−625)del or apoCIII (−455)C apoB Ile-71 *
apoCIII 3206G apoB Ile-71 *
PON 192arg apoB Ile-71 *
PON 192arg ACE (I/D, D/D) *
ACE (I/D, D/D) apoB Ile-71 **
ATIIR 1166C AGT Thr-235 *
ATIIR 1166C CBS Thr278/68-bp I *
AGT 235thr apoB Ile-71 **
AGT 235thr ATIIR 1166C *
CBS 278thr/68-bp I apoCIII (−625)del or apoCIII (−455)C *
CBS 278thr/68-bp I apoCIII (−428T)C *
GPIIIa 33pro ATIIR 1166C * *
fibrinogen (−455)A apoB Ile-71 *
          ▴ Predisposing: 3 5
          ▾ Protective: 0 7

For each pair listed, the odds ratio corresponds to the risk associated with carrying a second variant allele (relative to the more frequent allele of Marker 2) within the set of individuals who carried a first variant allele (the background marker). A total of 15 markers were analyzed in this pairwise manner. Both combined-gender and female-only quintiles were evaluated, as described in Methods. (**) P < 0.01; (*) 0.001 ≤ P < 0.05; (—) P > 0.05.