Table 2.
Distribution of the Enterobacteriaceae family.
| pg 2008 | ps 2008 | pg 2009 | ps 2009 | wg 2009 | ws 2009 | |
|---|---|---|---|---|---|---|
| Total sequences assigned to anything | 257 | 298 | 10849 | 8567 | 3805 | 4536 |
| Total RDP hits to Enterobacteriaceae | 202 (78.6) | 151 (50.7) | 5716 (52.7) | 2900 (33.9) | 15 (0.39) | 1 (0.02) |
| BLASTN total hit counts | 198 | 147 | 5025 | 2760 | 14 | 1 |
| BLASTN hits to Pantoea species | 172 (86.9) | 91 (61.9) | 1191 (23.7) | 1546 (56.0) | 1 (7.14) | 0 |
| BLASTN hits to Enterobacter species | 2 (1.01) | 35 (23.8) | 1665 (33.13) | 567 (20.5) | 7 (50.0) | 0 |
| BLASTN hits to Citrobacter species | 0 | 0 | 3 (0.06) | 1 (0.04) | 0 | 0 |
| BLASTN hits to Tatumella species | 0 | 0 | 208 (4.14) | 0 | 0 | 0 |
| BLASTN hits to Cronobacter species | 0 | 0 | 49 (0.98) | 25 (0.91) | 0 | 0 |
| BLASTN hits to Erwinia species | 0 | 2 (1.36) | 7 (0.14) | 4 (0.14) | 0 | 0 |
| BLASTN hits to Escherichia species | 2 (1.01) | 5 (3.40) | 52 (1.03) | 3 (0.11) | 0 | 0 |
| BLASTN hits to Klebsiella species | 0 | 2 (1.36) | 8 (0.16) | 3 (0.11) | 0 | 0 |
| BLASTN hits to Trabulsiella odontotermitis | 0 | 0 | 3 (0.06) | 8 (0.29) | 0 | 0 |
| Hits to other Enterobacteriaceae | 22 (11.11) | 12 (8.16) | 1839 (36.6) | 603 (21.9) | 6 (42.9) | 1 (100) |
Number of RDP hits to Enterobacteriaceae in tomato fruit surfaces and water samples and BLASTN hits to the different genera within the family (percentages are indicated between parentheses).