Table 2. Assessment of assay performance using P. falciparum samples obtained from patients with malaria (short-term and non-cultured samples).

		Intensity (R>0.1)	Filtration Aa	Filtration Bb	Correlation between replicatesc
Origin	No. samples	n° SNPs	n° SNPs	n° SNPs
PNG	23	310	312	309	0.997
Thailand	19	313	311	306	0.998
Cambodia	22	299	310	295	0.996
Kenya	19	310	305	304	0.998
Burkina Faso	37	308	314	307	0.999
Mali	23	311	313	307	0.999

Samples assessed on 319 “reliable” SNPs.

^aFiltration criteria A: SNPs with genotype concordance between replicates >0.95.

^bFiltration criteria B: SNPs with R>0.1 and with genotype concordance between replicates >0.95.

^cMean correlation between replicates.