Table 1.
Candidate Genes
| Gene | Start (Mb) | GenBank ID | Coding SNP ID | Regulatory SNP ID | |
|---|---|---|---|---|---|
| 1 | Bclaf1 | 20.03 | NM_001025392 | rs13460732, rs29337668 | |
| 2 | 2610016C23Rik | 20.07 | NM_027930 | rs48866598: P200L | rs29335130 |
| 3 | Ahi1 | 20.67 | NM_026203 | rs29367573, rs33849385 | |
| 4 | Myb | 20.84 | NM_010848 | rs29363766: Q500R | rs4228162 |
| 5 | Hbs1l | 21.02 | NM_001042593 | rs29323595, rs29369264, rs29323314, rs29336840 | |
| 6 | Aldh8a1 | 21.10 | NM_178713 | rs29318312, rs48185419 | |
| 7 | Vnn1 | 23.61 | NM_011704 | rs29380693: M3T | rs46507393, rs29336794, rs29343431, rs29346467, rs13470937, rs13470936 |
| 8 | Stx7 | 23.87 | NM_016797 | rs13460363 | |
| 9 | Ctgf | 24.32 | NM_010217 | rs8254419: M24T | rs29350272, mCV22788637, rs29365883, mCV22788630, rs3090586 |
| 10 | Enpp3 | 24.49 | NM_134005 | rs29346172: N476S | |
| 11 | Med23 | 24.59 | NM_027347 | rs29313977, rs29369897, rs29365798, rs29359873, rs29358040, mCV23515679, rs29338172, rs29358849 | |
| 12 | Akap7 | 24.89 | NM_018747 | rs29321461 | |
| 13 | Epb4.1l2 | 25.13 | NM_013511 | rs29380930: A640T | rs29321684, rs29313996, rs29332592, rs29361787, rs29360004, rs29331657, rs29319000, rs13470177, rs13470178 |
| 14 | 2010003K15Rik | 25.25 | NC_000076.5 | rs47049296: L32l | rs29382205, rs29321112 |
| 15 | Mtap7 | 19.87 | NM_008635 | ||
| 16 | Sgk1 | 23.87 | NM_011361 | ||
| 17 | L3mbtl3 | 26.00 | NM_172787 | ||
| 18 | Ptprk | 27.79 | NM_008983 | ||
| 19 | Enpp1 | 24.36 | NM_008813 | rs13470869: R650H rs13470868: S680R |
Candidate genes with known coding or regulatory SNPs and retinal expression are listed in rows 1–14. Rows 15–18 list four additional candidate genes that have no known coding or regulatory SNPs but are expressed in the developing retina. The candidate gene in row 19 is Enpp1, the expression of which covaries with Cpnc10 across the RI strain set and maps a cis-eQTL.