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. 2000 Oct;10(10):1509–1531. doi: 10.1101/gr.150300

Table 4.

Distribution of AFLP Fragments among Genomes and Chromosomes

Primer combination Chromosome


A genome B genome Total



1A 2A 3A 4A 5A 6A 7A Sub-T 1B 2B 3B 4B 5B 6B 7B Sub-T
















P55M53 0 0 2 1 0 1 0 4 (15.4) 3 9 2 1 2 0 5 22 (84.6) 26
P55M56 0 0 0 2 3 2 0 7 (33.3) 1 2 3 4 2 0 2 14 (66.7) 21
P55M60 1 2 4 5 2 1 1 16 (48.5) 4 3 2 0 0 4 4 17 (51.5) 33
P56M50 2 0 0 4 2 2 1 11 (42.3) 5 0 2 0 1 2 5 15 (57.7) 26
P56M52 2 3 1 3 2 1 0 12 (48.0) 2 1 3 0 4 2 1 13 (52.0) 25
P56M53 1 1 3 2 5 0 0 12 (42.9) 1 0 6 0 3 4 2 16 (57.1) 28
P56M60 2 3 3 3 1 1 1 14 (46.7) 2 2 0 3 3 3 3 16 (53.3) 30
P57M49 2 2 2 0 0 1 2 9 (33.3) 2 5 3 0 3 2 3 18 (66.7) 27
P57M51 2 1 4 0 2 1 1 11 (31.4) 3 4 8 1 2 2 4 24 (68.6) 35
P57M52 0 2 1 4 3 3 6 19 (52.8) 3 2 5 0 3 1 3 17 (47.2) 36
P57M53 1 0 0 3 2 0 6 12 (42.9) 0 2 3 3 3 3 2 16 (57.1) 28


















Total 13 14 20 27 22 13 18 127 (40.3) 26 30 37 12 26 23 34 188 (59.7) 315
LOG-linear analysis


Effect χ2 Probability



Genome (G) 9.53 <0.01
HG 6.29 0.392
PC 5.72 0.838
G × HG 12.82 <0.05
G × PC 9.59 0.477
HG × PC 60.07 0.473

(Sub-T) Sub-total; (HG) homoeologous group; (PC) primer combination; (G × HG) interaction between genome and homoeologous group; (G × PC) interaction between genome and primer combination; (HG × PC) interaction between homoelogous group and primer combination. The data in the parentheses are in percentage (%).