Table 4.
Varying Length
Len +/− | (kb) | Gap | Clones | Na | 1e-08 | 1e-10 | ||||
---|---|---|---|---|---|---|---|---|---|---|
Ctgs | F− | F+ | Ctgs | F− | F+ | |||||
40 | 10 | 455 | 55084 | 10 | 3k + 5kb | 8.5k − 630 | 207 | 3.5k + 12k | 16k − 1k | 98 |
100 | 20 | 11 | 22033 | 26 | 212 + 27 | 295 − 62 | 145 | 358 + 71 | 531 − 122 | 54 |
100 | 60 | 62 | 22033 | 26 | 217 + 244 | 1.5k − 1k | 292 | 380 + 668 | 3k − 1.5k | 130 |
165 | 20 | 3 | 13353 | 43 | 48 + 3 | 60 − 8 | 76 | 95 + 4 | 106 − 10 | 65 |
165 | 50 | 4 | 13353 | 43 | 38 + 1 | 72 − 36 | 94 | 72 + 4 | 144 − 71 | 58 |
165 | 80 | 4 | 13353 | 43 | 33 + 5 | 171 − 133 | 92 | 55 + 13 | 319 − 251 | 28 |
200 | 50 | 0 | 11016 | 52 | 26 + 0 | 37 − 13 | 77 | 46 + 0 | 71 − 27 | 56 |
(Ctgs) contigs; (F−) false-negative; (F+) false-positive.
The data set has perfect data, 20× coverage, and uses a 7 tolerance.
Average number of bands per clone.
A Nk is approximately N times 1000 clones.