Table 1.

Positional Weight Matrices for CRP and FNR Binding Motifs

CRP Weight Matrix					FNR Weight Matrix
A	C	G	T	Cns	A	C	G	T	Cns
0.97	−2.16	−1.70	0.61	A	0.80	−0.55	−0.16	−0.55	A
1.09	−6.57	−1.51	0.61	A	0.97	−0.55	−1.09	−0.16	A
0.80	−1.19	−0.14	−0.14	A	1.25	−1.09	−1.94	−0.16	A
−1.69	−1.19	−1.90	1.58	T	0.80	−0.55	−4.26	0.61	A
−2.46	−3.39	1.74	−1.33	G	−1.94	−1.94	−4.26	1.78	T
−1.51	−2.16	−4.23	1.75	T	−4.26	−4.26	−4.26	1.96	T
−1.51	−6.57	1.80	−2.46	G	−4.26	−4.26	1.96	−4.26	G
1.75	−2.16	−2.16	−2.46	A	1.78	−4.26	−4.26	−1.09	A
−0.35	0.06	−0.61	0.61	T	−4.26	−0.55	−4.26	1.70	T
−0.20	0.52	−0.14	−0.35	C	0.39	−0.55	−0.16	0.14	A
−1.06	0.33	−0.71	0.72	T	0.14	−1.94	−1.09	1.12	T
0.72	−0.71	0.33	−1.06	A	1.12	−1.09	−1.94	0.14	A
−0.35	−0.14	0.52	−0.20	G	0.14	−0.16	−0.55	0.39	T
0.61	−0.61	0.06	−0.35	A	1.70	−4.26	−0.55	−4.26	A
−2.46	−2.16	−2.16	1.75	T	−1.09	−4.26	−4.26	1.78	T
−2.46	1.80	−6.57	−1.51	C	−4.26	1.96	−4.26	−4.26	C
1.75	−4.23	−2.16	−1.51	A	1.96	−4.26	−4.26	−4.26	A
−1.33	1.74	−3.39	−2.46	C	1.78	−4.26	−1.94	−1.94	A
1.58	−1.90	−1.19	−1.69	A	0.61	−4.26	−0.55	0.80	T
−0.14	−0.14	−1.19	0.80	T	−0.16	−1.94	−1.09	1.25	T
0.61	−1.51	−6.57	1.09	T	−0.16	−1.09	−0.55	0.97	T
0.61	−1.70	−2.16	0.97	T	−0.55	−0.16	−0.55	0.80	T
I = 12.88 bits					I = 13.74 bits

Each column displays the weight of the given nucleotide at that position. Highly conserved nucleotides are in bold. Cns, consensus. They are derived at each position by highest value. I, sample-size adjusted information content (in units of bits).