Table 3.

Training Set TUs Regulated by CRP

Operon	Site sequence	Position	Score
ansB	TTTTGTTACCTGCCTCTAACTT	−125	10.57
araC	AAGTGTGACGCCGTGCAAATAA	−230	13.93
araBAD	TTATTTGCACGGCGTCACACTT	−131	13.93
araE	AATTGGAATATCCATCACATAA	−131	12.78
araFG-araH1-araH2	CGATGTGATATTGCTCTCCTAT	−163	10.0
caiTABCDE	TATTGTTAAGTTCCTCACCAAT	−335	10.97
	TATTGTTTTATGGATCACCAAT	−278	10.88
	AAATGTGATACCAATCACAGAA	−158	20.42
crp	GTATGCAAAGGACGTCACATTA	−137	11.71
cyaA	AGGTGTTAAATTGATCACGTTT	−173	12.67
dadAX	AGATGTGAGCCAGCTCACCATA	−117	16.48
deoCABD	TTATTTGAACCAGATCGCATTA	−150	17.12
	AATTGTGATGTGTATCGAAGTG	−97	11.87
dsdXA	TAAAGTGAACCATATCTCAATT	−155	16.77
epd-pgk	AAGTGTGATGTGAGTCAGATAA	−213	17.30
focA-pf1B	AGATATGATCTATATCAATTTC	−78	10.14
fur	AAATGTAAGCTGTGCCACGTTT	−158	13.81
galETKM	TAATTTATTCCATGTCACACTT	−78	13.12
galS	TGCTGTGACTCGATTCACGAAG	−95	10.41
glgS	AAGTGTGATCGGGGACAATATA	−124	11.51
glnALG	CTTTGTGATCGCTTTCACGGAG	−269	9.23
glpTQ	ATGTGTGCGGCAATTCACATTT	−129	17.25
glpD	TAATGTTATACATATCACTCTA	−117	15.65
glpFK	TTTTATGACGAGGCACACACAT	−142	10.48
gntT	TAATATGACCAACCTCTCATAA	−237	13.80
lacZYA	TAATGTGAGTTAGCTCACTCAT	−110	18.32
malEFG	TTATGTGCGCATCTCCACATTA	−161	11.25
	TTCTGTAACAGAGATCACACAA	−132	16.06
malI	TAGTGAGGCATAAATCACATTA	−102	15.70
	AAACGTTTTATCTGTCACATAA	−42	11.14
malK-lamB-malM	TTGTGTGATCTCTGTTACAGAA	−255	16.06
	TAATGTGGAGATGCGCACATAA	−226	11.25
malS	ATTTGAGAGTTGAATCTCAAAT	−270	13.97
	AAATGTGGGGGTTATCGCAAAA	−153	11.26
malT	AATTGTGACACAGTGCAAATTC	−143	13.48
malXY	TTATGTGACAGATAAAACGTTT	−155	11.14
	TAATGTGATTTATGCCTCACTA	−95	15.70
nagE	TTTGGTGACAAAACTCACAAAA	−177	14.51
	ATTTGCGATACGAATTAAATTT	−143	12.59
nagBACD	TTTTGTGAGTTTTGTCACCAAA	−178	14.51
	AAATTTAATTCGTATCGCAAAT	−212	12.59
nupG	AAATGTTATCCACATCACAATT	−119	20.43
	TTATTTGCCACAGGTAACAAAA	−69	10.59
ompA	ATGCCTGACGGAGTTCACACTT	−188	12.84
ppiA	TTTTGTGATCTGTTTAAATGTT	−204	10.23
	AGAGGTGATTTTGATCACGGAA	−151	12.33
proP	ATGTGTGAAGTTGATCACAAAT	−228	20.45
ptsHI-crr	TTTTGTGGCCTGCTTCAAACTT	−338	14.43
rhaBAD	AATTGTGAACATCATCACGTTC	−127	15.16
	AAATGCGGTGAGCATCACATCA	−162	12.41
rhaT	AGATGTGAAGCAAATCACCCAC	−145	13.65
rpoS	AACTGCGACCACGGTCACAGCG	−270	8.77
sdhCDAB	TATCGTGACCTGGATCACTGTT	−314	16.41
tdcABC	ATTTGTGAGTGGTCGCACATAT	−82	15.0
	AAATGTGACATGCCGCATTATT	−384	10.83
tnaLAB	GATTGTGATTCGATTCACATTT	−95	19.61
tsx	AACTGTGAAACGAAACATATTT	−129	12.93
udp	TTATGTGATTTGCATCACTTTT	−145	20.62
	CATGGTGATGAGTATCACGAAA	−93	11.04
uhpT	AAGCGTGATGCATCTCACCTTT	−145	16.51
yhfa	TAATGTGACGTCCTTTGCATAC	−187	11.71

This table contains top scoring site for all 46 TUs, plus any additional sites with scores above 10 bits. Position of a CRP site is relative to the translation start of the first downstream gene. The same rule applies to all sites in Tables 3–8.