Table 7.
Haemophilus influenzae TUs Predicted to Belong to the FNR Regulon
| Operon | Site sequence | Position | Score |
|---|---|---|---|
| TUs Orthologous to Training Set TUs | |||
| fnr-HI1426 | ATATTTGCGTTAGATCAATTTT | −53 | 14.48 |
| Category I | |||
| cpdB | GATTTTGATGAAAATCAATTAC | −165 | 22.58 |
| GAATTTGATTTTGATGAAAATC | −171 | 16.91 | |
| cydAB | CAATTTGATCTAAGTCAATTAA | −298 | 21.54 |
| moaACDE | AATACTGATTTTCATCAATATT | −200 | 20.68 |
| AATTATGATTTAAATCAATAAA | −348 | 19.29 | |
| ATAATTGATTTTTAAGAATTTA | −226 | 16.20 | |
| pepT | AATATTGTTATATATCAAGATG | −76 | 20.61 |
| potA | CATCTTGATATATAACAATATT | −215 | 20.61 |
| pyrG | TTAATTGACTTAGATCAAATTG | −376 | 21.53 |
| HI1503 | TAATTTGATTTACATCAATCAA | −319 | 21.00 |
| HI1677 | AATATTGATGAAAATCAGTATT | −267 | 20.68 |
| TTTATTGATTTAAATCATAATT | −119 | 19.29 | |
| TAAATTCTTAAAAATCAATTAT | −241 | 16.20 | |
| Category IIA | |||
| HI0017 | AATTTTAATTTAGATCAAATTT | −148 | 19.80 |
| ung | AAATTTGATCTAAATTAAAATT | −132 | 19.80 |
| Category IIB | |||
| HI0588 | TTGTTTGACGAATATCAAAAAA | −45 | 15.29 |
| TTTTTTCATATTCATCAAAAGT | −287 | 14.06 | |
| HI1129-HI1130ftsLI-murEF-mraY-murD | TATTTTGATAAAAATCAGTTGC TTATTTGTTCTACAACAAAATT | −148 −353 | 18.62 17.49 |
Listed are predictions from categories I, IIA, IIB, and TUs containing orthologs to genes in the training set.