Table 3. Primer and probe sequences.

Primer or probe	Sequence (5′-3′)	Target
MH531	TGTGTGCCCGTCTGTTGTGT	Total HIV DNAa
MH532	GAGTCCTGCGTCGAGAGAGC
LRT-P*	FAM-CAGTGGCGCCCGAACAGGGA-TAMRA
MH535	AACTAGGGAACCCACTGCTTAAG	2LTR circlea
MH536	TCCACAGATCAAGGATATCTTGTC
MH603rd , *	FAM-AAAGCTTGCCTTGAGTGCTTCAAGTAGTGT-TAMRA
L-M667	ATGCCACGTAAGCGAAACTGGCTAACTAGGGAACCCACTG	Integrated HIV DNAb
Alu1	TCCCAGCTACTGGGGAGGCTGAGG	(first-round PCR)
Alu2	GCCTCCCAAAGTGCTGGGATTACAG
Lambda T	ATGCCACGTAAGCGAAACT	Integrated HIV DNA
AA55M	GCTAGAGATTTTCCACACTGACTAA	(second-round PCR)
LRT-P*	FAM-CAGTGGCGCCCGAACAGGGA-TAMRA
CCR5-f	CAAAAAGAAGGTCTTCATTACACC	CCR5c
CCR5-r	CCTGTGCCTCTTCTTCTCATTTCG
CCR5-p*	FAM-GCGAGTCCTGCCGCTGCTTGTCATGGTCCTCGC-DABCYL

*: probe sequence;

^a: Butler et al., 2001;

^b: Brussel and Sonigo, 2003;

^c: Huang et al., 1996; Lai et al., 2003;

^d: reverse complement as in the reference.