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. 2001 Jun;11(6):1005–1017. doi: 10.1101/gr.187101

Figure 2.

Figure 2

Figure 2

Figure 2

Figure 2

Example of pericentromeric duplication using fuguization method. (A) A graphical view of the output for our method as displayed in the program PARASIGHT (J.A. Bailey, unpubl.). Compared to miropeats (B; Parsons 1995), all of the positions of similarity have been captured as continuous large alignments (C). An example of a large insertion-deletion in an alignment (D) demonstrates the ability of fuguization to traverse such regions returning larger more meaningful alignments. Lower thresholds (>500 aligned bases; >90% identity) were used for this test case compared to our genome analysis.