. 2001 Aug;11(8):1441–1452. doi: 10.1101/gr.184001

Table 1.

Gene context of 67 Rice Mirosatellites from Four Fully-Sequenced PAC Clones Comprising 654,596 nt of Genomic DNA Sequence

SSR class	Total no.SSRs in this class	SSRs of this class in CDSs		SSRs of this class in UTRs		SSRs of this class in introns		SSRs of this class in intergenic spaces
SSR class	Total no.SSRs in this class
no.	%	no.	%	no.	%	no.	%

(AT)n	14	0	0.0	0	0.0	3	21.4	11	78.6
(GA)n	13	1	7.7	0	0.0	2	15.4	10	76.9
(CA)n	4	0	0.0	0	0.0	0	0.0	4	100.0
AT-rich TNRs	11	2	18.2	4	36.4	2	18.2	3	27.3
GC-rich TNRs	21	17	80.1	1	4.8	1	4.8	2	9.6
Tetranucleotides	4	0	0.0	1	25.0	0	0.0	3	75.0

Clones used to compile these statistics: chr. 1, AC007789 and AP000969; chr. 6, AP000616 and AP001129.

Abbreviations: SSR, simple sequence repeat; TNR, trinucleotide; CDS, coding DNA sequence; UTR, untranslated region.