Table 1.

cis/TF's Matches to Documented TF Binding Sites

TF	Rank	Correlation (r value)a	Significance level	Program prediction	Documented siteb
Knockout lines
STE12	4	0.89	0.001	?TGAAACc	ATGAAA
BAS1	7	0.52	0.01	?GAGTCA	GAGTCA
PDR3	5	0.65	0.05	CGCGG?T	TCCG(C,T)GGA
MET28	4	0.87	0.001	?GTCACG	TCACGTG
GCR1d	2	0.99	0.001	ACCA?CC	C(A,T)TCC
GCN4d	38	0.50	0.01	TGACTC?	TGANTNe
Total evaluated: 11
Cell cycle (high density arrays)
MET32	2	0.99	0.001	CT?TGGC	AACTGTGG
GCN4	2	0.95	0.001	CTGAC?C	TGANTNe
Total evaluated: 6
Cell cycle (cDNA arrays)
PHO4	1	0.95	0.002	CACG?G	CACGT(T,G)
Total evaluated: 9

^aProbability that the correlation is different from zero. 

^bTaken from SCPD. 

^c“?” denotes a position where the program allowed any base. 

^dThese two did not meet criteria for successful hits. 

^eApproximately one-half of the 20 documented GCN4 binding sites in SCPD contained the sequence TGACTC.