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. 2001 Oct;11(10):1677–1685. doi: 10.1101/gr.198301

Table 1.

GF-Type L1 Sequences Used in This Study

L1 name Accession # GI # Databasea Coordinatesb Intact ORF1/ORF2 # full length monomersc # truncated monomersc % identity with body consensusd Active w/wo CMV promoter










GF13 AF146793 7684609 nr 114636–121199 Y/Y 2.2 2 99.5 Y/N?
GF21 AC021631 13310926 htgs/nr 68991–62229 Y/Y 3.3 2 99.5 Y/Y
GF23 AF229843 6862583 nr 42031–48206 N/Y 0.7 1 98.6
GF26 AC002406 2981248 nr 19967–26229 N/N 1.2 1 96.1
GF27 AC026767 12643015 htgs/nr 118223–110609 N/Y 2.2 2 99.4 N/N?
GF36 AC003996 2772523 nr 20312–27252 Y/N 1.4 3 96
GF43 AL450393 11876100 htgs 7656–13977 Y/Y 1.1 2 99.6
GF46 AL049866 7630118 nr 22185–15089 Y/N 5.1 1 99.3
GF56 AC058786 11120825 nr 200048–206662 Y/N 2.4 2 99.6
GF62 AC068252 13357510 htgs 161311–154202 Y/Y 6.1 1 99.6 Y/Y
GF68 AC006508 4454569 nr 167020–160414 N/N 2.2 2 97.7
GF71 AC079221 10122065 htgs 58136–64915 Y/N 1.1 1 98.4
GF78 AC007978 12000475 nr 42762–49862 Y/N 5.1 1 99.4
GF82 AC083912 10697433 htgs 925–7430 Y/Y 2 2 99.2
GF84 AC087134 11610860 htgs 179278–172998 N/N 1.7 0 92.6
GF251 AF259071 8571430 nr 61240–55080 Y/N 1.1 0 96.4
GF253 AF259073 8575573 nr 6526–256 Y/N 1.7 0 93.4
a

Database refers to the non-redundant or high-throughput genomic sequence databases of GenBank. 

b

Coordinates are the first and last nucleotides in the GenBank record delimiting the L1. 

c

See Figure 1B for description of monomer structure. 

d

Identity with GF consensus sequence beginning 250 bp upstream of the start of ORF1.