Table 6.
Rules inferred by GRNCOP2
| Rule found by | ||||||||
|---|---|---|---|---|---|---|---|---|
| Rules | GRNCOP | Soinov et. al. | Bulashevska and Eils | |||||
| +/- | CLB1 | 0 | → | +/- | CLB2 | * | - | + |
| +/- | CLB1 | 3 | → | +/- | CLB5 | |||
| +/- | CLB1 | 3 | → | +/- | CLB6 | |||
| +/- | CLB1 | 0 | → | -/+ | CLN2 | * | ||
| +/- | CLB1 | 0 | → | +/- | SWI5 | * | ||
| +/- | CLB2 | 0 | → | +/- | CDC20 | |||
| +/- | CLB2 | 0 | → | +/- | CLB1 | * | * | + |
| +/- | CLB2 | 3 | → | +/- | CLB5 | |||
| +/- | CLB2 | 3 | → | +/- | CLB6 | |||
| +/- | CLB2 | 0 | → | -/+ | CLN2 | |||
| +/- | CLB2 | 0 | → | +/- | SWI5 | * | ||
| +/- | CLB5 | 4 | → | +/- | CLB2 | |||
| +/- | CLB5 | 0 | → | +/- | CLB6 | * | + | |
| +/- | CLB5 | 3 | → | -/+ | CLB6 | |||
| +/- | CLB6 | 0 | → | -/+ | CLB1 | + | ||
| +/- | CLB6 | 0 | → | +/- | CLB5 | * | + | |
| +/- | CLB6 | 3 | → | -/+ | CLB5 | |||
| +/- | CLB6 | 0 | → | +/- | CLN2 | * | ||
| +/- | CLB6 | 1 | → | +/- | CLN2 | |||
| +/- | CLN1 | 0 | → | +/- | CLB6 | * | ||
| +/- | CLN1 | 2 | → | -/+ | CLB6 | |||
| +/- | CLN1 | 0 | → | +/- | CLN2 | * | ||
| +/- | CLN2 | 4 | → | +/- | CLB2 | |||
| +/- | CLN2 | 0 | → | +/- | CLB5 | * | ||
| +/- | CLN2 | 0 | → | +/- | CLB6 | * | ||
| +/- | CLN2 | 2 | → | -/+ | CLB6 | |||
| +/- | CLN2 | 3 | → | -/+ | CLB6 | |||
| +/- | SIC1 | 0 | → | +/- | CLB5 | |||
| +/- | SWI4 | 0 | → | +/- | CLB5 | |||
| +/- | SWI4 | 4 | → | -/+ | CLB5 | |||
| +/- | SWI5 | 0 | → | +/- | CDC20 | * | ||
| +/- | SWI5 | 0 | → | +/- | CLB2 | * | + | |
| +/- | SWI5 | 3 | → | +/- | CLB6 | |||
Rules inferred by GRNCOP2 using 20 cyclin genes of the datasets from Spellman et al. (1998). The last three columns indicate whether the rules were found by any of the other methods. The complete rules are represented by an *; + for positive regulatory relationship, and - for the negative regulatory relationship.