Table 2.
GenBank | |||||
---|---|---|---|---|---|
Genotype * (%) |
Isolate code | No. isolates | position 1 (Ec2563) |
position 2 (Ec2449) |
position 4** (Ec1921) |
A1B2B3A4 | Bb2-5, Bb32-33, Bb35, Bb45, Bb48-49 | 10 | EF115312 | EF115308 (433a) | |
Bb1, Bb6-12, Bb14-17, Bb20-21, Bb23-31, | |||||
Bb34, Bb36, Bb41-42, Bb44, Bb46-47, | |||||
Bb52-54, Bb56 | 34 | EF115312 | EF115307 (443b) | ||
B1A2B3A4 | Bb51 | 1 | EF115313 | EF115309 (427) | |
B1B2B3A4 | Bb13, Bb18 | 2 | EF115310 (443c) | ||
Bb22, Bb37, Bb39-40, Bb43 | 5 | EF115311 (443d) | |||
Bb38, Bb55 | 2 | EF115309 (427) | |||
B1B2B3B4 | Bb19, Bb50, Bb57 | 3 | - | - | - |
*A, presence, and B, absence of a given intron at the 3'-end of the nuclear LSU rDNA genes. Numbers 1-4 represent insertion sites Ec2563, Ec2449, Ec2066 and Ec1921, respectively, as previously described [25].
** Sequence types inserted at position 4 (Ec1921) are indicated by their sizes in bp, followed by a letter for identical sizes (i.e., 443a, b, c, d) to indicate small differences in their composition.