Table 1.
Number of DMT sequences returned in Pfam mining
| EamA | TPT | DUF914 | UAA | NST | DUF803 | UPF0546 | DUF1632 | Zip | Cation efflux | |
|---|---|---|---|---|---|---|---|---|---|---|
| Hsa | 20 (20) | 9 (9) | 3 (3) | 4 (4) | 5 (5) | 6 (6) | 1 (1) | 1 (1) | 14 (14) | 10 (10) |
| Mmu | 12 (9) | 9 (9) | 3 (3) | 4 (4) | 5 (5) | 6 (6) | 1 (1) | 1 (1) | 14 (14) | 10 (10) |
| Gga | 7 (6) | 9 (9) | 3 (3) | 4 (4) | 5 (5) | 8 (8) | 1 (1) | 1 (1) | 8 (8) | 12 (12) |
| Tru | 11 (8) | 10 (10) | 4 (0) | 4 (4) | 6 (6) | 6 (6) | 0 (0) | 0 (0) | 14 (13) | 12 (12) |
| Cin | 16 (11) | 6 (6) | 3 (2) | 4 (4) | 3 (3) | 3 (3) | 0 (0) | 0 (0) | 8 (7) | 7 (7) |
| Dme | 5 (4) | 4 (4) | 0 (0) | 5 (5) | 3 (3) | 1 (1) | 1 (1) | 0 (0) | 11 (10) | 7 (7) |
| Cel | 1 (1) | 6 (6) | 1 (1) | 5 (5) | 9 (8) | 1 (1) | 1 (1) | 6 (6) | 15 (14) | 12 (12) |
| Nve | 16 (12) | 8 (8) | 1 (1) | 4 (4) | 6 (6) | 3 (3) | 1 (1) | 0 (0) | 20 (18) | 13 (13) |
| Tad | 22 (19) | 7 (7) | 3 (3) | 4 (4) | 3 (3) | 2 (2) | 1 (1) | 0 (0) | 10 (8) | 5 (5) |
| Sce | 7 (5) | 4 (4) | 0 (0) | 4 (4) | 0 (0) | 0 (0) | 0 (0) | 0 (0) | 5 (5) | 5 (5) |
| Ddi | 10 (7) | 7 (7) | 4 (4) | 4 (4) | 1 (1) | 0 (0) | 1 (1) | 2 (2) | 9 (7) | 6 (5) |
| Ath | 105 (67) | 59 (59) | 7 (5) | 9 (9) | 4 (4) | 9 (9) | 1 (1) | 0 (0) | 20 (18) | 12 (12) |
Table lists number of full-length sequences obtained from the mining of the model organism proteomes listed in [additional file 1: supplementary table S1], containing Pfam-A HMM hits to DMTs listed in [additional file 2: supplementary table S2]. The parenthesized numbers show the change of sequence counts after alignment editing. The species abbreviations are as follows: H. sapiens (Hsa), M. musculus (Mmu), G. gallus (Gga), T. rubripes (Tru), C. intestinalis (Cin), D. melanogaster (Dme), C. elegans (Cel), N. vectensis (Nve), T. adhaerens (Tad), S. cerevisiae (Sce), D. discoideum (Ddi), A. thaliana (Ath).