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. 2011 May 12;11:123. doi: 10.1186/1471-2148-11-123

Table 2.

Divergence process table of domain evolution from EamA

Domain halve distance (100-p) Average distance (100-p) from EamA Standard deviation of similarity (p) to EamA
EamA 0,6% 0,0% 0,0
TPT 3,1% 0,7% 0,7
DUF914 2,7% 1,0% 0,7
UAA 6,9% 1,3% 1,0
NST 96,6% 2,4% 2,0

Divergence process table showing increasing distance between DMT-1 and DMT-2, and increasing distance to EamA. The measurements are indicated in HHsearch probability and presented as (100-p) to convert similarity to distance. The domain halve distance is reported using DMT-1 as HMM query and DMT-2 as 'database'. The standard deviation is shown because each measurement in the EamA distance column represents the average of (DMT-1 to EamA-1; DMT-1 to EamA-2; DMT-2 to EamA-1; DMT-2 to EamA-2).