Table 1.
List of the SNP markers significantly associated with skatole levels in the pig population analyzed
| Allele Frequency | ||||||
|---|---|---|---|---|---|---|
| SNP | Position | Major Allele | Minor Allele | Regression Coefficient | p-value | q-value |
| Region 1 | ||||||
| MARC0019446 | 636,696 | T: 0.52 | G: 0.48 | 0.26 | 0.0000323 | 0.02 |
| ASGA0084674 | 645,690 | T: 0.51 | G: 0.49 | 0.26 | 0.0000420 | 0.02 |
| Region 2 | ||||||
| MARC0044930 | 1,795,517 | G: 0.77 | A: 0.23 | 0.31 | 0.0000331 | 0.02 |
| ASGA0096130 | 1,802,015 | A: 0.74 | C: 0.26 | 0.24 | 0.0002333 | 0.05 |
| ASGA0098975 | 1,939,519 | G: 0.76 | A: 0.24 | 0.32 | 0.0000758 | 0.02 |
| ALGA0107039 | 2,113,937 | G: 0.77 | T: 0.23 | 0.30 | 0.0000352 | 0.02 |
| ALGA0116170 | 2,117,567 | G: 0.76 | T: 0.24 | 0.27 | 0.0002347 | 0.05 |
| ALGA0115841 | 2,125,025 | C: 0.76 | T: 0.24 | 0.30 | 0.0002955 | 0.05 |
| ALGA0110693 | 2,156,144 | C: 0.73 | A: 0.27 | 0.31 | 0.0002065 | 0.05 |
| Region 3 | ||||||
| ALGA0115538 | 3,353,995 | G: 0.70 | A: 0.30 | 0.25 | 0.0003122 | 0.05 |
| MARC0034202 | 3,573,079 | G: 0.79 | A: 0.21 | 0.27 | 0.0002793 | 0.05 |
| ALGA0034369 | 3,596,641 | A: 0.75 | G: 0.25 | 0.31 | 0.0000290 | 0.02 |
| MARC0067306 | 3,923,036 | T: 0.73 | C: 0.27 | -0.26 | 0.0000801 | 0.03 |
| MARC0019712 | 3,936,297 | C: 0.79 | T: 0.21 | 0.29 | 0.0001532 | 0.04 |
| Isolated Markers | ||||||
| MARC0009863 | 5,222,760 | G: 0.51 | A: 0.49 | 0.24 | 0.0001098 | 0.03 |
| ALGA0113531 | 5,901,175 | T: 0.55 | G: 0.45 | -0.22 | 0.0002927 | 0.05 |
All markers are located on SSC6.