Table 3.

SSAHA Searches for Different Values of k

k	90%		95%		100%
Thash	Tsearch	Thash	Tsearch	Thash	Tsearch
10	824.0s	102.5s	842.4s	128.8s	868.5s	389.5s
11	798.3s	26.3s	810.5s	36.1s	808.8s	199.1s
12	952.2s	7.3s	969.9s	11.0s	961.2s	119.0s
13	850.8s	2.2s	859.1s	4.5s	851.4s	78.7s
14	914.1s	0.9s	932.0s	2.5s	927.1s	51.6s
15	996.0s	0.1s	1015.5s	1.7s	999.2s	35.4s