Table 2.
Top 10 most abundant protein-coding transcripts identified in each alfalfa stem internodes library.
| Unique_ID | Libraries | Putative Functions | |||
|---|---|---|---|---|---|
| 708_ES | 708_PES | 773_ES | 773_PES | ||
| ------------ RPKM-normalized expression counts ------------ | |||||
| MSGI1_2417 | 6068 (1)† | 6754 (1) | 3271 (2) | 6034 (1) | Leucine-rich repeat family protein |
| MSGI1_8746 | 4812 (2) | 4697 (3) | 3850 (1) | 3586 (2) | Chlorophyll a/b binding protein |
| MSGI1_523 | 4213 (3) | 5428 (2) | 2719 (6) | 3552 (3) | Beta ketoacyl CoA synthase |
| MSGI1_18145 | 3859 (4) | 979 | 2555 (8) | 3400 (4) | Rubisco small chain |
| MSGI1_27309 | 748 | 2453 (7) | 1317 | 3336 (5) | Metallothionein |
| MSGI1_11989 | 2315 (6) | 2574 (5) | 1171 | 2387 (6) | Uncharacterized protein |
| MSGI1_6529 | 265 | 328 | 2393 (9) | 2350 (7) | Glycine rich protein |
| MSGI1_1166 | 1458 | 1486 | 901 | 2182 (8) | AAA ATPase |
| MSGI1_62398 | 160 | 225 | 1267 | 2168 (9) | Stress (ABA)-inducible protein |
| MSGI1_21335 | 2012 (8) | 2465 (6) | 1275 | 2155 (10) | Cytochrome P450-like |
| MSGI1_8707 | 2762 (5) | 2632 (4) | 1854 | 1833 | Chlorophyll a/b binding protein |
| MSGI1_4749 | 1425 | 1682 (10) | 1298 | 1693 | Polyubiquitin |
| MSGI1_5229 | 2287 (7) | 2140 (8) | 1507 | 1561 | Chlorophyll a/b binding protein |
| MSGI1_1270 | 744 | 969 | 3145 (3) | 1470 | Caffeic acid O-methyltransferase |
| MSGI1_1415 | 1723 (9) | 1215 | 764 | 1468 | Elongation factor 1-alpha |
| MSGI1_36219 | 1633 | 1777 (9) | 723 | 1256 | Uncharacterized protein |
| MSGI1_5153 | 1705 (10) | 1531 | 1058 | 1090 | Chlorophyll a/b binding protein |
| MSGI1_29285 | 324 | 513 | 2861 (4) | 1035 | Stress (ABA)-inducible protein |
| MSGI1_13276 | 86 | 77 | 2750 (5) | 423 | Cold acclimation responsive protein |
| MSGI1_7576 | 274 | 114 | 2357 (10) | 284 | Cold-acclimation-specific protein (CAS) |
| MSGI1_96533 | 11 | 5 | 2580 (7) | 16 | Cold acclimation-specific protein CAS) |
† Top 10 most abundant protein-coding transcripts selected from each library are highlighted in bold. Numbers enclosed in parenthesis represent rank based on transcript frequency for the top 10 most abundant protein-coding transcripts in each library.